Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_24545 and NIAGMN_24550 are separated by 37 nucleotides NIAGMN_24550 and NIAGMN_24555 are separated by 75 nucleotides NIAGMN_24555 and NIAGMN_24560 are separated by 4 nucleotides NIAGMN_24560 and NIAGMN_24565 are separated by 50 nucleotides NIAGMN_24565 and NIAGMN_24570 are separated by 270 nucleotides NIAGMN_24570 and NIAGMN_24575 overlap by 1 nucleotides NIAGMN_24575 and NIAGMN_24580 are separated by 7 nucleotides
NIAGMN_24545: NIAGMN_24545 - DUF1378 domain-containing protein, at 4,790,940 to 4,791,122
_24545
NIAGMN_24550: NIAGMN_24550 - DUF826 domain-containing protein, at 4,791,160 to 4,791,429
_24550
NIAGMN_24555: NIAGMN_24555 - lysis protein, at 4,791,505 to 4,791,720
_24555
NIAGMN_24560: NIAGMN_24560 - DUF1327 domain-containing protein, at 4,791,725 to 4,792,069
_24560
NIAGMN_24565: NIAGMN_24565 - SAR-endolysin, at 4,792,120 to 4,792,653
_24565
NIAGMN_24570: NIAGMN_24570 - Phage antirepressor protein, at 4,792,924 to 4,793,493
_24570
NIAGMN_24575: NIAGMN_24575 - hypothetical protein, at 4,793,493 to 4,793,639
_24575
NIAGMN_24580: NIAGMN_24580 - lysis protein, at 4,793,647 to 4,794,114
_24580
Position (kb) 4792
4793 Strain fitness (log2 ratio) -1
0
1 at 4791.427 kb on + strand at 4791.427 kb on + strand at 4791.427 kb on + strand at 4791.433 kb on + strand at 4791.433 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 4,791,427 + -0.9 4,791,427 + -1.0 4,791,427 + +1.7 4,791,433 + +0.7 4,791,433 + +0.5
Or see this region's nucleotide sequence