Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23935

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_23930 and ymdE are separated by 13 nucleotidesymdE and ycdU overlap by 4 nucleotides NIAGMN_23930: NIAGMN_23930 - hypothetical protein, at 4,686,928 to 4,688,316 _23930 NIAGMN_23935: ymdE - Putative uncharacterized protein YmdE, at 4,688,330 to 4,689,271 ymdE NIAGMN_23940: ycdU - Uncharacterized protein YcdU, at 4,689,268 to 4,690,254 ycdU Position (kb) 4688 4689 4690Strain fitness (log2 ratio) -1 0 1 2at 4688.199 kb on - strandat 4688.219 kb on - strandat 4688.290 kb on + strandat 4688.312 kb on + strandat 4688.312 kb on + strandat 4688.313 kb on - strandat 4688.313 kb on - strandat 4688.313 kb on - strandat 4688.813 kb on - strand, within ymdEat 4689.134 kb on - strand, within ymdEat 4689.167 kb on - strand, within ymdEat 4689.227 kb on - strandat 4689.328 kb on + strandat 4689.607 kb on + strand, within ycdU

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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4,688,199 - +1.8
4,688,219 - -0.2
4,688,290 + -1.2
4,688,312 + +0.3
4,688,312 + +0.3
4,688,313 - +0.6
4,688,313 - +0.8
4,688,313 - -0.5
4,688,813 - ymdE NIAGMN_23935 0.51 -0.6
4,689,134 - ymdE NIAGMN_23935 0.85 +0.2
4,689,167 - ymdE NIAGMN_23935 0.89 +0.3
4,689,227 - +0.8
4,689,328 + +1.1
4,689,607 + ycdU NIAGMN_23940 0.34 -0.3

Or see this region's nucleotide sequence