Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_23460 and NIAGMN_23465 are separated by 134 nucleotides NIAGMN_23465 and NIAGMN_23470 are separated by 40 nucleotides NIAGMN_23470 and NIAGMN_23475 are separated by 76 nucleotides NIAGMN_23475 and NIAGMN_23480 are separated by 4 nucleotides NIAGMN_23480 and NIAGMN_23485 are separated by 270 nucleotides NIAGMN_23485 and NIAGMN_23490 overlap by 1 nucleotides NIAGMN_23490 and NIAGMN_23495 are separated by 7 nucleotides
NIAGMN_23460: NIAGMN_23460 - sialate O-acetylesterase, at 4,589,997 to 4,591,934
_23460
NIAGMN_23465: NIAGMN_23465 - DUF1378 domain-containing protein, at 4,592,069 to 4,592,248
_23465
NIAGMN_23470: NIAGMN_23470 - DUF826 domain-containing protein, at 4,592,289 to 4,592,561
_23470
NIAGMN_23475: NIAGMN_23475 - holin, at 4,592,638 to 4,592,853
_23475
NIAGMN_23480: NIAGMN_23480 - SAR-endolysin, at 4,592,858 to 4,593,391
_23480
NIAGMN_23485: NIAGMN_23485 - Phage antirepressor protein, at 4,593,662 to 4,594,231
_23485
NIAGMN_23490: NIAGMN_23490 - hypothetical protein, at 4,594,231 to 4,594,377
_23490
NIAGMN_23495: NIAGMN_23495 - Spanin, inner membrane subunit, at 4,594,385 to 4,594,849
_23495
Position (kb) 4592
4593
4594 Strain fitness (log2 ratio) -1
0
1 at 4591.888 kb on + strand at 4592.014 kb on + strand at 4592.043 kb on - strand at 4592.444 kb on - strand, within NIAGMN_23470
Per-strain Table
Or see this region's nucleotide sequence