Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22655

Experiment: TP9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntldtA and Asn_trna are separated by 55 nucleotidesAsn_trna and nac are separated by 325 nucleotidesnac and cbl are separated by 101 nucleotides NIAGMN_22645: ldtA - L,D-transpeptidase, at 4,467,576 to 4,468,511 ldtA NIAGMN_22650: Asn_trna - tRNA-Asn(gtt), at 4,468,567 to 4,468,642 _trna NIAGMN_22655: nac - nitrogen assimilation transcriptional regulator NAC, at 4,468,968 to 4,469,885 nac NIAGMN_22660: cbl - HTH-type transcriptional regulator Cbl, at 4,469,987 to 4,470,937 cbl Position (kb) 4468 4469 4470Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4468.138 kb on + strand, within ldtAat 4468.139 kb on - strand, within ldtAat 4468.545 kb on - strandat 4468.922 kb on + strandat 4469.299 kb on + strand, within nacat 4469.840 kb on + strandat 4469.841 kb on - strandat 4470.095 kb on - strand, within cblat 4470.145 kb on + strand, within cblat 4470.256 kb on + strand, within cblat 4470.289 kb on + strand, within cblat 4470.304 kb on + strand, within cblat 4470.363 kb on + strand, within cblat 4470.490 kb on + strand, within cblat 4470.491 kb on - strand, within cblat 4470.530 kb on - strand, within cblat 4470.568 kb on - strand, within cblat 4470.576 kb on - strand, within cblat 4470.646 kb on + strand, within cblat 4470.787 kb on + strand, within cblat 4470.788 kb on - strand, within cblat 4470.829 kb on + strand, within cbl

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP9
remove
4,468,138 + ldtA NIAGMN_22645 0.60 +2.9
4,468,139 - ldtA NIAGMN_22645 0.60 +1.9
4,468,545 - -0.9
4,468,922 + +1.9
4,469,299 + nac NIAGMN_22655 0.36 +0.9
4,469,840 + +0.3
4,469,841 - +0.1
4,470,095 - cbl NIAGMN_22660 0.11 +1.3
4,470,145 + cbl NIAGMN_22660 0.17 +0.9
4,470,256 + cbl NIAGMN_22660 0.28 +1.3
4,470,289 + cbl NIAGMN_22660 0.32 +1.7
4,470,304 + cbl NIAGMN_22660 0.33 +0.6
4,470,363 + cbl NIAGMN_22660 0.40 +0.1
4,470,490 + cbl NIAGMN_22660 0.53 -2.1
4,470,491 - cbl NIAGMN_22660 0.53 +1.5
4,470,530 - cbl NIAGMN_22660 0.57 +1.9
4,470,568 - cbl NIAGMN_22660 0.61 +0.9
4,470,576 - cbl NIAGMN_22660 0.62 +0.4
4,470,646 + cbl NIAGMN_22660 0.69 -0.3
4,470,787 + cbl NIAGMN_22660 0.84 +1.9
4,470,788 - cbl NIAGMN_22660 0.84 -1.1
4,470,829 + cbl NIAGMN_22660 0.89 -0.5

Or see this region's nucleotide sequence