Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt terY and pphC are separated by 77 nucleotides pphC and yegI overlap by 4 nucleotides yegI and yegD are separated by 12 nucleotides
NIAGMN_22180: terY - Uncharacterized protein YegL, at 4,372,139 to 4,372,798
terY
NIAGMN_22185: pphC - Serine/threonine-protein phosphatase 3, at 4,372,876 to 4,373,556
pphC
NIAGMN_22190: yegI - protein kinase YegI, at 4,373,553 to 4,375,493
yegI
NIAGMN_22195: yegD - molecular chaperone, at 4,375,506 to 4,376,810
yegD
Position (kb) 4373
4374
4375
4376 Strain fitness (log2 ratio) -1
0
1
2
3 at 4372.636 kb on + strand, within terY at 4372.686 kb on + strand, within terY at 4372.705 kb on + strand, within terY at 4372.713 kb on + strand, within terY at 4372.813 kb on + strand at 4372.853 kb on + strand at 4372.996 kb on + strand, within pphC at 4372.996 kb on + strand, within pphC at 4373.040 kb on + strand, within pphC at 4373.346 kb on + strand, within pphC at 4373.355 kb on + strand, within pphC at 4373.523 kb on + strand at 4373.566 kb on + strand at 4373.567 kb on - strand at 4373.568 kb on + strand at 4373.810 kb on + strand, within yegI at 4373.911 kb on - strand, within yegI at 4373.911 kb on - strand, within yegI at 4373.978 kb on - strand, within yegI at 4373.993 kb on + strand, within yegI at 4373.993 kb on + strand, within yegI at 4374.279 kb on + strand, within yegI at 4374.553 kb on - strand, within yegI at 4374.553 kb on - strand, within yegI at 4374.557 kb on + strand, within yegI at 4374.801 kb on - strand, within yegI at 4374.824 kb on + strand, within yegI at 4374.912 kb on + strand, within yegI at 4374.922 kb on + strand, within yegI at 4374.922 kb on + strand, within yegI at 4375.112 kb on + strand, within yegI at 4375.136 kb on + strand, within yegI at 4375.318 kb on + strand at 4375.508 kb on - strand at 4375.649 kb on - strand, within yegD at 4375.653 kb on - strand, within yegD at 4375.885 kb on - strand, within yegD at 4375.932 kb on - strand, within yegD at 4375.932 kb on - strand, within yegD at 4375.953 kb on - strand, within yegD at 4376.245 kb on - strand, within yegD at 4376.245 kb on - strand, within yegD at 4376.257 kb on + strand, within yegD at 4376.412 kb on - strand, within yegD
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 4,372,636 + terY NIAGMN_22180 0.75 +0.8 4,372,686 + terY NIAGMN_22180 0.83 +0.6 4,372,705 + terY NIAGMN_22180 0.86 +0.5 4,372,713 + terY NIAGMN_22180 0.87 +0.8 4,372,813 + +1.8 4,372,853 + -0.4 4,372,996 + pphC NIAGMN_22185 0.18 -0.2 4,372,996 + pphC NIAGMN_22185 0.18 +1.4 4,373,040 + pphC NIAGMN_22185 0.24 -0.5 4,373,346 + pphC NIAGMN_22185 0.69 -0.8 4,373,355 + pphC NIAGMN_22185 0.70 -0.8 4,373,523 + -1.4 4,373,566 + -1.7 4,373,567 - +3.0 4,373,568 + -0.2 4,373,810 + yegI NIAGMN_22190 0.13 -0.8 4,373,911 - yegI NIAGMN_22190 0.18 -0.7 4,373,911 - yegI NIAGMN_22190 0.18 +1.8 4,373,978 - yegI NIAGMN_22190 0.22 +0.8 4,373,993 + yegI NIAGMN_22190 0.23 +1.8 4,373,993 + yegI NIAGMN_22190 0.23 +0.2 4,374,279 + yegI NIAGMN_22190 0.37 +1.8 4,374,553 - yegI NIAGMN_22190 0.52 +1.8 4,374,553 - yegI NIAGMN_22190 0.52 -0.1 4,374,557 + yegI NIAGMN_22190 0.52 +0.2 4,374,801 - yegI NIAGMN_22190 0.64 +0.1 4,374,824 + yegI NIAGMN_22190 0.65 -1.4 4,374,912 + yegI NIAGMN_22190 0.70 -0.7 4,374,922 + yegI NIAGMN_22190 0.71 -1.0 4,374,922 + yegI NIAGMN_22190 0.71 +0.1 4,375,112 + yegI NIAGMN_22190 0.80 +1.1 4,375,136 + yegI NIAGMN_22190 0.82 -0.2 4,375,318 + +0.8 4,375,508 - -0.6 4,375,649 - yegD NIAGMN_22195 0.11 -0.5 4,375,653 - yegD NIAGMN_22195 0.11 -0.4 4,375,885 - yegD NIAGMN_22195 0.29 +0.7 4,375,932 - yegD NIAGMN_22195 0.33 +1.2 4,375,932 - yegD NIAGMN_22195 0.33 +0.2 4,375,953 - yegD NIAGMN_22195 0.34 -0.5 4,376,245 - yegD NIAGMN_22195 0.57 +0.8 4,376,245 - yegD NIAGMN_22195 0.57 -1.5 4,376,257 + yegD NIAGMN_22195 0.58 +1.4 4,376,412 - yegD NIAGMN_22195 0.69 -0.7
Or see this region's nucleotide sequence