Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gatZ and gatA are separated by 9 nucleotides gatA and gatB are separated by 30 nucleotides gatB and gatB are separated by 3 nucleotides gatB and gatD are separated by 47 nucleotides
NIAGMN_22065: gatZ - tagatose-bisphosphate aldolase subunit GatZ, at 4,350,510 to 4,351,772
gatZ
NIAGMN_22070: gatA - PTS galactitol transporter subunit IIA, at 4,351,782 to 4,352,234
gatA
NIAGMN_22075: gatB - PTS galactitol transporter subunit IIB, at 4,352,265 to 4,352,549
gatB
NIAGMN_22080: gatB - PTS galactitol transporter subunit IIB, at 4,352,553 to 4,353,908
gatB
NIAGMN_22085: gatD - galactitol-1-phosphate 5-dehydrogenase, at 4,353,956 to 4,354,996
gatD
Position (kb) 4352
4353
4354 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4351.781 kb on + strand at 4351.900 kb on + strand, within gatA at 4352.211 kb on + strand at 4352.245 kb on - strand at 4352.403 kb on + strand, within gatB at 4352.405 kb on + strand, within gatB at 4352.425 kb on + strand, within gatB at 4352.621 kb on + strand at 4352.908 kb on + strand, within gatB at 4353.108 kb on + strand, within gatB at 4353.108 kb on + strand, within gatB at 4353.108 kb on + strand, within gatB at 4353.140 kb on + strand, within gatB at 4353.289 kb on + strand, within gatB at 4353.289 kb on + strand, within gatB at 4353.945 kb on + strand at 4353.946 kb on - strand at 4354.148 kb on - strand, within gatD at 4354.325 kb on - strand, within gatD at 4354.453 kb on + strand, within gatD at 4354.534 kb on + strand, within gatD at 4354.585 kb on + strand, within gatD at 4354.585 kb on + strand, within gatD at 4354.758 kb on + strand, within gatD at 4354.782 kb on + strand, within gatD at 4354.882 kb on + strand, within gatD at 4354.882 kb on + strand, within gatD at 4354.882 kb on + strand, within gatD at 4354.882 kb on + strand, within gatD at 4354.882 kb on + strand, within gatD at 4354.883 kb on - strand, within gatD
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 4,351,781 + +0.1 4,351,900 + gatA NIAGMN_22070 0.26 +1.2 4,352,211 + +0.8 4,352,245 - +1.2 4,352,403 + gatB NIAGMN_22075 0.48 +1.8 4,352,405 + gatB NIAGMN_22075 0.49 +1.9 4,352,425 + gatB NIAGMN_22075 0.56 -2.0 4,352,621 + +1.8 4,352,908 + gatB NIAGMN_22080 0.26 +1.8 4,353,108 + gatB NIAGMN_22080 0.41 +0.8 4,353,108 + gatB NIAGMN_22080 0.41 +1.8 4,353,108 + gatB NIAGMN_22080 0.41 -0.7 4,353,140 + gatB NIAGMN_22080 0.43 +0.2 4,353,289 + gatB NIAGMN_22080 0.54 +0.5 4,353,289 + gatB NIAGMN_22080 0.54 -1.9 4,353,945 + +0.2 4,353,946 - +0.6 4,354,148 - gatD NIAGMN_22085 0.18 +1.4 4,354,325 - gatD NIAGMN_22085 0.35 +0.6 4,354,453 + gatD NIAGMN_22085 0.48 -0.5 4,354,534 + gatD NIAGMN_22085 0.56 -0.8 4,354,585 + gatD NIAGMN_22085 0.60 -0.2 4,354,585 + gatD NIAGMN_22085 0.60 +2.8 4,354,758 + gatD NIAGMN_22085 0.77 +3.4 4,354,782 + gatD NIAGMN_22085 0.79 +0.2 4,354,882 + gatD NIAGMN_22085 0.89 +0.8 4,354,882 + gatD NIAGMN_22085 0.89 -0.5 4,354,882 + gatD NIAGMN_22085 0.89 -0.2 4,354,882 + gatD NIAGMN_22085 0.89 -0.2 4,354,882 + gatD NIAGMN_22085 0.89 +0.6 4,354,883 - gatD NIAGMN_22085 0.89 -0.2
Or see this region's nucleotide sequence