Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18925

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnadK and grpE are separated by 122 nucleotidesgrpE and yfjD are separated by 54 nucleotides NIAGMN_18920: nadK - NAD(+) kinase, at 3,729,955 to 3,730,833 nadK NIAGMN_18925: grpE - nucleotide exchange factor GrpE, at 3,730,956 to 3,731,549 grpE NIAGMN_18930: yfjD - UPF0053 inner membrane protein YfjD, at 3,731,604 to 3,732,845 yfjD Position (kb) 3730 3731 3732Strain fitness (log2 ratio) -2 -1 0 1 2at 3730.907 kb on + strandat 3730.910 kb on + strandat 3730.920 kb on + strandat 3731.530 kb on + strandat 3731.565 kb on + strandat 3731.658 kb on - strandat 3731.658 kb on - strandat 3731.663 kb on + strandat 3731.663 kb on + strandat 3731.663 kb on + strandat 3731.663 kb on + strandat 3731.664 kb on - strandat 3731.664 kb on - strandat 3731.664 kb on - strandat 3731.674 kb on - strandat 3731.674 kb on - strandat 3731.674 kb on - strandat 3731.695 kb on + strandat 3731.722 kb on - strandat 3731.722 kb on - strandat 3732.036 kb on - strand, within yfjDat 3732.053 kb on - strand, within yfjDat 3732.053 kb on - strand, within yfjDat 3732.130 kb on - strand, within yfjDat 3732.130 kb on - strand, within yfjDat 3732.130 kb on - strand, within yfjDat 3732.140 kb on + strand, within yfjDat 3732.141 kb on - strand, within yfjDat 3732.141 kb on - strand, within yfjDat 3732.141 kb on - strand, within yfjDat 3732.216 kb on - strand, within yfjDat 3732.317 kb on + strand, within yfjDat 3732.318 kb on - strand, within yfjDat 3732.318 kb on - strand, within yfjD

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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3,730,907 + +0.3
3,730,910 + -0.5
3,730,920 + -1.6
3,731,530 + -0.8
3,731,565 + -2.3
3,731,658 - -1.8
3,731,658 - -0.7
3,731,663 + +1.0
3,731,663 + +0.3
3,731,663 + +0.0
3,731,663 + +0.6
3,731,664 - -0.7
3,731,664 - +0.6
3,731,664 - -0.9
3,731,674 - +1.6
3,731,674 - +0.5
3,731,674 - -1.0
3,731,695 + +0.0
3,731,722 - -0.7
3,731,722 - -1.7
3,732,036 - yfjD NIAGMN_18930 0.35 +1.6
3,732,053 - yfjD NIAGMN_18930 0.36 +2.5
3,732,053 - yfjD NIAGMN_18930 0.36 +0.5
3,732,130 - yfjD NIAGMN_18930 0.42 +0.6
3,732,130 - yfjD NIAGMN_18930 0.42 +0.1
3,732,130 - yfjD NIAGMN_18930 0.42 +0.3
3,732,140 + yfjD NIAGMN_18930 0.43 -0.3
3,732,141 - yfjD NIAGMN_18930 0.43 +0.4
3,732,141 - yfjD NIAGMN_18930 0.43 -1.0
3,732,141 - yfjD NIAGMN_18930 0.43 +0.1
3,732,216 - yfjD NIAGMN_18930 0.49 +0.4
3,732,317 + yfjD NIAGMN_18930 0.57 +0.5
3,732,318 - yfjD NIAGMN_18930 0.57 -0.5
3,732,318 - yfjD NIAGMN_18930 0.57 +0.0

Or see this region's nucleotide sequence