Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18755

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_18745 and NIAGMN_18750 are separated by 97 nucleotidesNIAGMN_18750 and NIAGMN_18755 are separated by 395 nucleotidesNIAGMN_18755 and NIAGMN_18760 are separated by 75 nucleotidesNIAGMN_18760 and tra8 are separated by 35 nucleotides NIAGMN_18745: NIAGMN_18745 - hypothetical protein, at 3,707,405 to 3,707,803 _18745 NIAGMN_18750: NIAGMN_18750 - hypothetical protein, at 3,707,901 to 3,708,314 _18750 NIAGMN_18755: NIAGMN_18755 - Procyclic acidic repetitive protein (PARP), at 3,708,710 to 3,709,960 _18755 NIAGMN_18760: NIAGMN_18760 - SmpA-OmlA domain-containing protein, at 3,710,036 to 3,710,338 _18760 NIAGMN_18765: tra8 - IS30 family transposase, at 3,710,374 to 3,711,129 tra8 Position (kb) 3708 3709 3710Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3708.114 kb on + strand, within NIAGMN_18750at 3708.448 kb on + strandat 3708.448 kb on + strandat 3708.624 kb on - strandat 3708.689 kb on - strandat 3709.442 kb on + strand, within NIAGMN_18755at 3709.442 kb on + strand, within NIAGMN_18755at 3709.462 kb on + strand, within NIAGMN_18755at 3709.693 kb on + strand, within NIAGMN_18755at 3709.717 kb on + strand, within NIAGMN_18755at 3709.938 kb on + strandat 3709.963 kb on + strandat 3709.963 kb on + strandat 3709.963 kb on + strandat 3709.985 kb on - strandat 3709.988 kb on + strandat 3710.034 kb on - strandat 3710.082 kb on + strand, within NIAGMN_18760at 3710.083 kb on - strand, within NIAGMN_18760at 3710.083 kb on - strand, within NIAGMN_18760at 3710.083 kb on - strand, within NIAGMN_18760at 3710.125 kb on + strand, within NIAGMN_18760at 3710.126 kb on - strand, within NIAGMN_18760at 3710.198 kb on - strand, within NIAGMN_18760at 3710.198 kb on - strand, within NIAGMN_18760at 3710.199 kb on + strand, within NIAGMN_18760at 3710.199 kb on + strand, within NIAGMN_18760at 3710.199 kb on + strand, within NIAGMN_18760at 3710.199 kb on + strand, within NIAGMN_18760at 3710.200 kb on - strand, within NIAGMN_18760at 3710.200 kb on - strand, within NIAGMN_18760at 3710.203 kb on + strand, within NIAGMN_18760at 3710.203 kb on + strand, within NIAGMN_18760at 3710.204 kb on - strand, within NIAGMN_18760at 3710.204 kb on - strand, within NIAGMN_18760at 3710.204 kb on - strand, within NIAGMN_18760at 3710.208 kb on + strand, within NIAGMN_18760at 3710.208 kb on + strand, within NIAGMN_18760at 3710.208 kb on + strand, within NIAGMN_18760at 3710.209 kb on - strand, within NIAGMN_18760at 3710.268 kb on - strand, within NIAGMN_18760at 3710.352 kb on - strandat 3710.352 kb on - strandat 3710.390 kb on - strandat 3710.390 kb on - strandat 3710.390 kb on - strandat 3710.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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3,708,114 + NIAGMN_18750 0.51 -1.3
3,708,448 + -0.4
3,708,448 + +0.3
3,708,624 - -1.2
3,708,689 - -0.7
3,709,442 + NIAGMN_18755 0.59 -1.9
3,709,442 + NIAGMN_18755 0.59 +0.1
3,709,462 + NIAGMN_18755 0.60 -0.7
3,709,693 + NIAGMN_18755 0.79 -0.1
3,709,717 + NIAGMN_18755 0.80 +0.2
3,709,938 + -0.5
3,709,963 + -2.4
3,709,963 + -1.2
3,709,963 + -2.2
3,709,985 - +0.1
3,709,988 + -0.9
3,710,034 - -0.2
3,710,082 + NIAGMN_18760 0.15 +0.2
3,710,083 - NIAGMN_18760 0.16 +0.6
3,710,083 - NIAGMN_18760 0.16 -1.5
3,710,083 - NIAGMN_18760 0.16 -0.2
3,710,125 + NIAGMN_18760 0.29 -2.6
3,710,126 - NIAGMN_18760 0.30 +0.2
3,710,198 - NIAGMN_18760 0.53 +0.1
3,710,198 - NIAGMN_18760 0.53 +2.2
3,710,199 + NIAGMN_18760 0.54 -2.8
3,710,199 + NIAGMN_18760 0.54 +0.6
3,710,199 + NIAGMN_18760 0.54 +1.3
3,710,199 + NIAGMN_18760 0.54 +0.8
3,710,200 - NIAGMN_18760 0.54 -0.9
3,710,200 - NIAGMN_18760 0.54 +1.9
3,710,203 + NIAGMN_18760 0.55 -0.4
3,710,203 + NIAGMN_18760 0.55 -1.5
3,710,204 - NIAGMN_18760 0.55 -0.5
3,710,204 - NIAGMN_18760 0.55 +0.8
3,710,204 - NIAGMN_18760 0.55 -0.4
3,710,208 + NIAGMN_18760 0.57 +0.5
3,710,208 + NIAGMN_18760 0.57 +0.1
3,710,208 + NIAGMN_18760 0.57 +0.3
3,710,209 - NIAGMN_18760 0.57 -0.2
3,710,268 - NIAGMN_18760 0.77 -0.2
3,710,352 - +0.9
3,710,352 - -0.7
3,710,390 - +0.6
3,710,390 - +0.5
3,710,390 - +0.1
3,710,390 - +0.9

Or see this region's nucleotide sequence