Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16425

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoD and dnaG are separated by 194 nucleotidesdnaG and rpsU are separated by 110 nucleotidesrpsU and tsaD are separated by 237 nucleotides NIAGMN_16420: rpoD - RNA polymerase sigma factor RpoD, at 3,247,310 to 3,249,151 rpoD NIAGMN_16425: dnaG - DNA primase, at 3,249,346 to 3,251,091 dnaG NIAGMN_16430: rpsU - 30S ribosomal protein S21, at 3,251,202 to 3,251,417 rpsU NIAGMN_16435: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 3,251,655 to 3,252,668 tsaD Position (kb) 3249 3250 3251 3252Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3249.259 kb on - strandat 3249.273 kb on - strandat 3249.273 kb on - strandat 3249.273 kb on - strandat 3249.273 kb on - strandat 3249.275 kb on - strandat 3249.275 kb on - strandat 3249.275 kb on - strandat 3249.277 kb on - strandat 3249.277 kb on - strandat 3249.277 kb on - strandat 3249.335 kb on - strandat 3249.335 kb on - strandat 3249.335 kb on - strandat 3251.092 kb on - strandat 3251.116 kb on - strandat 3251.547 kb on + strandat 3251.548 kb on - strandat 3251.548 kb on - strandat 3251.550 kb on - strandat 3251.562 kb on + strandat 3251.562 kb on + strandat 3251.562 kb on + strandat 3251.562 kb on + strandat 3251.563 kb on - strandat 3251.564 kb on + strandat 3251.564 kb on + strandat 3251.565 kb on - strandat 3251.565 kb on - strandat 3251.565 kb on - strandat 3251.565 kb on - strandat 3251.598 kb on + strandat 3251.598 kb on + strandat 3251.619 kb on + strandat 3251.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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3,249,259 - +0.9
3,249,273 - +0.9
3,249,273 - +1.9
3,249,273 - +0.6
3,249,273 - -0.6
3,249,275 - +0.9
3,249,275 - +2.9
3,249,275 - +0.3
3,249,277 - +0.1
3,249,277 - +0.7
3,249,277 - -1.1
3,249,335 - -0.0
3,249,335 - +0.7
3,249,335 - -2.0
3,251,092 - +0.9
3,251,116 - -1.7
3,251,547 + -0.1
3,251,548 - +0.4
3,251,548 - -0.1
3,251,550 - -0.2
3,251,562 + +0.7
3,251,562 + +0.3
3,251,562 + -0.5
3,251,562 + +0.6
3,251,563 - +2.2
3,251,564 + -0.3
3,251,564 + -0.2
3,251,565 - +0.2
3,251,565 - -0.9
3,251,565 - +0.1
3,251,565 - -1.6
3,251,598 + -0.1
3,251,598 + +0.2
3,251,619 + +0.5
3,251,631 + -0.3

Or see this region's nucleotide sequence