Strain Fitness in Escherichia coli ECRC102 around NIAGMN_14955

Experiment: TP9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP9
2,983,175	+	cysG	NIAGMN_14950	0.40	+0.2
2,983,230	+	cysG	NIAGMN_14950	0.44	-0.0
2,983,231	-	cysG	NIAGMN_14950	0.44	-1.1
2,983,233	+	cysG	NIAGMN_14950	0.44	-0.5
2,983,233	+	cysG	NIAGMN_14950	0.44	-0.6
2,983,257	-	cysG	NIAGMN_14950	0.46	+1.3
2,983,376	-	cysG	NIAGMN_14950	0.55	-1.5
2,983,514	-	cysG	NIAGMN_14950	0.65	+0.2
2,983,527	-	cysG	NIAGMN_14950	0.66	+0.7
2,983,648	-	cysG	NIAGMN_14950	0.75	+1.0
2,983,648	-	cysG	NIAGMN_14950	0.75	+0.3
2,983,659	+	cysG	NIAGMN_14950	0.75	+0.5
2,983,659	+	cysG	NIAGMN_14950	0.75	+0.5
2,983,659	+	cysG	NIAGMN_14950	0.75	-0.8
2,983,659	+	cysG	NIAGMN_14950	0.75	+1.8
2,983,660	-	cysG	NIAGMN_14950	0.76	+0.2
2,983,740	+	cysG	NIAGMN_14950	0.81	-0.2
2,983,823	-	cysG	NIAGMN_14950	0.87	-0.3
2,983,868	-				+0.5
2,983,868	-				+0.2
2,983,868	-				-0.3
2,983,900	+				+0.4
2,983,978	+				+0.4
2,983,979	-				-0.1
2,983,980	+				-0.0
2,983,980	+				+1.0
2,983,981	-				-1.1
2,984,008	+				-0.7
2,984,009	-				-0.7
2,984,011	+				+0.6
2,984,011	+				+0.8
2,984,011	+				-0.2
2,984,011	+				+0.7
2,984,012	-				-0.0
2,984,012	-				-0.7
2,984,012	-				+0.7
2,984,012	-				-0.4
2,984,012	-				+0.4
2,984,015	+				+0.7
2,984,077	-				-0.2
2,984,081	+				-3.6
2,984,081	+				-0.6
2,984,081	+				-0.1
2,984,081	+				+0.2
2,984,082	-				-0.7
2,984,082	-				+1.3
2,984,121	+	nirC	NIAGMN_14955	0.13	-0.9
2,984,121	+	nirC	NIAGMN_14955	0.13	+0.1
2,984,149	-	nirC	NIAGMN_14955	0.17	+0.3
2,984,250	+	nirC	NIAGMN_14955	0.29	-0.4
2,984,251	-	nirC	NIAGMN_14955	0.29	-0.6
2,984,251	-	nirC	NIAGMN_14955	0.29	-1.2
2,984,340	+	nirC	NIAGMN_14955	0.40	+2.0
2,984,366	-	nirC	NIAGMN_14955	0.44	-0.1
2,984,366	-	nirC	NIAGMN_14955	0.44	-1.2
2,984,418	+	nirC	NIAGMN_14955	0.50	-1.3
2,984,418	+	nirC	NIAGMN_14955	0.50	-1.0
2,984,418	+	nirC	NIAGMN_14955	0.50	-0.6
2,984,418	+	nirC	NIAGMN_14955	0.50	-0.3
2,984,419	-	nirC	NIAGMN_14955	0.50	+0.2
2,984,419	-	nirC	NIAGMN_14955	0.50	-3.0
2,984,423	-	nirC	NIAGMN_14955	0.51	+2.0
2,984,452	-	nirC	NIAGMN_14955	0.54	+1.0
2,984,453	+	nirC	NIAGMN_14955	0.54	-0.5
2,984,453	+	nirC	NIAGMN_14955	0.54	-1.9
2,984,453	+	nirC	NIAGMN_14955	0.54	-0.3
2,984,453	+	nirC	NIAGMN_14955	0.54	-0.6
2,984,453	+	nirC	NIAGMN_14955	0.54	+0.5
2,984,454	-	nirC	NIAGMN_14955	0.55	+0.0
2,984,454	-	nirC	NIAGMN_14955	0.55	-0.4
2,984,454	-	nirC	NIAGMN_14955	0.55	+1.2
2,984,601	+	nirC	NIAGMN_14955	0.73	+0.4
2,984,683	-	nirC	NIAGMN_14955	0.83	-0.6
2,984,711	+	nirC	NIAGMN_14955	0.86	+0.5
2,984,712	-	nirC	NIAGMN_14955	0.86	-0.1
2,984,799	+				+0.5
2,984,800	-				-0.7
2,984,827	-				-0.4
2,984,887	-				+0.3
2,985,205	-	nirD	NIAGMN_14960	0.79	+0.4
2,985,205	-	nirD	NIAGMN_14960	0.79	+0.4
2,985,205	-	nirD	NIAGMN_14960	0.79	+0.4
2,985,205	-	nirD	NIAGMN_14960	0.79	+0.5
2,985,205	-	nirD	NIAGMN_14960	0.79	-0.1
2,985,294	-				+2.0
2,985,301	+				-1.0
2,985,302	-				+0.5
2,985,309	+				+0.8
2,985,416	-				-0.4
2,985,443	+				-0.1
2,985,443	+				+0.4
2,985,525	+	nirB	NIAGMN_14965	0.10	+0.5
2,985,551	+	nirB	NIAGMN_14965	0.11	-1.5
2,985,565	+	nirB	NIAGMN_14965	0.12	+3.0
2,985,594	+	nirB	NIAGMN_14965	0.13	+0.2
2,985,594	+	nirB	NIAGMN_14965	0.13	+0.4
2,985,594	+	nirB	NIAGMN_14965	0.13	+0.2
2,985,595	-	nirB	NIAGMN_14965	0.13	-0.3
2,985,595	-	nirB	NIAGMN_14965	0.13	-0.6
2,985,595	-	nirB	NIAGMN_14965	0.13	+1.2
2,985,595	-	nirB	NIAGMN_14965	0.13	-0.6
2,985,595	-	nirB	NIAGMN_14965	0.13	-0.1
2,985,618	+	nirB	NIAGMN_14965	0.14	+0.8
2,985,619	-	nirB	NIAGMN_14965	0.14	-1.2
2,985,699	+	nirB	NIAGMN_14965	0.17	+1.2
2,985,699	+	nirB	NIAGMN_14965	0.17	+0.1
2,985,700	-	nirB	NIAGMN_14965	0.17	-0.6
2,985,727	+	nirB	NIAGMN_14965	0.18	+1.2
2,985,731	-	nirB	NIAGMN_14965	0.18	-0.9
2,985,731	-	nirB	NIAGMN_14965	0.18	-1.7
2,985,743	-	nirB	NIAGMN_14965	0.19	+0.4
2,985,770	-	nirB	NIAGMN_14965	0.20	-0.0
2,985,805	+	nirB	NIAGMN_14965	0.21	-0.2
2,985,819	+	nirB	NIAGMN_14965	0.22	-0.0
2,985,820	-	nirB	NIAGMN_14965	0.22	+1.0