Strain Fitness in Escherichia coli ECRC102 around NIAGMN_10055

Experiment: TP9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP9
1,974,898	+	yjfK	NIAGMN_10050	0.15	+0.1
1,974,899	-	yjfK	NIAGMN_10050	0.16	+0.4
1,974,918	+	yjfK	NIAGMN_10050	0.18	-0.7
1,974,919	-	yjfK	NIAGMN_10050	0.19	+1.0
1,974,919	-	yjfK	NIAGMN_10050	0.19	+2.0
1,975,007	+	yjfK	NIAGMN_10050	0.32	+2.0
1,975,143	-	yjfK	NIAGMN_10050	0.53	-0.8
1,975,143	-	yjfK	NIAGMN_10050	0.53	-0.8
1,975,143	-	yjfK	NIAGMN_10050	0.53	-0.3
1,975,143	-	yjfK	NIAGMN_10050	0.53	+0.5
1,975,155	-	yjfK	NIAGMN_10050	0.54	+0.8
1,975,170	+	yjfK	NIAGMN_10050	0.57	-0.5
1,975,170	+	yjfK	NIAGMN_10050	0.57	-0.8
1,975,171	-	yjfK	NIAGMN_10050	0.57	+0.4
1,975,189	-	yjfK	NIAGMN_10050	0.60	+0.0
1,975,238	+	yjfK	NIAGMN_10050	0.67	-1.5
1,975,238	+	yjfK	NIAGMN_10050	0.67	+1.3
1,975,239	-	yjfK	NIAGMN_10050	0.67	+0.7
1,975,239	-	yjfK	NIAGMN_10050	0.67	+0.4
1,975,239	-	yjfK	NIAGMN_10050	0.67	-0.1
1,975,239	-	yjfK	NIAGMN_10050	0.67	+0.2
1,975,241	+	yjfK	NIAGMN_10050	0.67	-0.1
1,975,292	-	yjfK	NIAGMN_10050	0.75	-1.0
1,975,297	-	yjfK	NIAGMN_10050	0.76	+1.4
1,975,365	+	yjfK	NIAGMN_10050	0.86	-0.3
1,975,416	+				-0.2
1,975,416	+				-0.5
1,975,416	+				+0.1
1,975,417	-				+1.0
1,975,417	-				+0.1
1,975,417	-				+0.0
1,975,455	+				+0.8
1,975,455	+				+1.5
1,975,455	+				+1.0
1,975,455	+				-0.4
1,975,455	+				+1.1
1,975,455	+				+0.9
1,975,471	+				+0.8
1,975,471	+				-0.6
1,975,471	+				+0.7
1,975,472	-				+2.0
1,975,536	+				-1.4
1,975,536	+				+0.2
1,975,536	+				-0.8
1,975,537	-				+0.4
1,975,537	-				+0.1
1,975,537	-				-0.3
1,975,537	-				-0.0
1,975,537	-				+1.4
1,975,537	-				-0.3
1,975,539	+				-1.6
1,975,539	+				-0.3
1,975,539	+				-0.1
1,975,539	+				+0.6
1,975,539	+				-1.0
1,975,539	+				-1.7
1,975,539	+				+0.2
1,975,539	+				+0.5
1,975,540	-				-0.1
1,975,540	-				-0.2
1,975,540	-				+0.7
1,975,540	-				-1.2
1,975,540	-				-0.2
1,975,540	-				-0.8
1,975,554	-				-1.4
1,975,559	+				+0.7
1,975,559	+				+0.1
1,975,559	+				+0.5
1,975,560	-				+0.3
1,975,560	-				+0.4
1,975,560	-				+0.3
1,975,626	+	yjfJ	NIAGMN_10055	0.17	+1.6
1,975,627	-	yjfJ	NIAGMN_10055	0.17	-0.3
1,975,687	-	yjfJ	NIAGMN_10055	0.26	+0.1
1,975,730	+	yjfJ	NIAGMN_10055	0.32	+0.6
1,976,031	+	yjfJ	NIAGMN_10055	0.75	-0.0
1,976,031	+	yjfJ	NIAGMN_10055	0.75	-0.8
1,976,032	-	yjfJ	NIAGMN_10055	0.75	-1.0
1,976,091	-	yjfJ	NIAGMN_10055	0.84	+0.3
1,976,102	+	yjfJ	NIAGMN_10055	0.85	+1.3
1,976,181	-				+1.1
1,976,204	+				-0.2
1,976,225	-				+0.8
1,976,418	-	yjfI	NIAGMN_10060	0.49	-1.0
1,976,626	+				+0.5
1,976,630	-				-0.3
1,976,677	+				+0.7
1,976,677	+				+0.6
1,976,697	+				-0.8
1,976,697	+				-1.3
1,976,697	+				+0.1
1,976,699	+				+0.3
1,976,752	+				+0.4
1,976,753	-				+0.4
1,976,779	-				+0.5
1,976,779	-				+0.4
1,976,880	-	rlmB	NIAGMN_10065	0.18	-0.2
1,976,942	+	rlmB	NIAGMN_10065	0.26	-2.3
1,976,942	+	rlmB	NIAGMN_10065	0.26	-1.0
1,976,942	+	rlmB	NIAGMN_10065	0.26	-1.9
1,976,943	-	rlmB	NIAGMN_10065	0.26	+0.6
1,976,943	-	rlmB	NIAGMN_10065	0.26	+0.7
1,976,978	+	rlmB	NIAGMN_10065	0.31	-1.0
1,976,996	+	rlmB	NIAGMN_10065	0.33	+0.2
1,976,996	+	rlmB	NIAGMN_10065	0.33	+0.8
1,976,996	+	rlmB	NIAGMN_10065	0.33	+0.4
1,976,997	-	rlmB	NIAGMN_10065	0.34	-0.1
1,976,997	-	rlmB	NIAGMN_10065	0.34	+0.2
1,976,997	-	rlmB	NIAGMN_10065	0.34	+0.2
1,976,997	-	rlmB	NIAGMN_10065	0.34	+0.2
1,977,060	+	rlmB	NIAGMN_10065	0.42	-0.4