Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lgoD and lgoR are separated by 138 nucleotides lgoR and lgoT are separated by 214 nucleotides
NIAGMN_09210: lgoD - L-galactonate oxidoreductase, at 1,785,125 to 1,786,147
lgoD
NIAGMN_09215: lgoR - putative HTH-type transcriptional regulator LgoR, at 1,786,286 to 1,787,200
lgoR
NIAGMN_09220: lgoT - putative L-galactonate transporter, at 1,787,415 to 1,788,776
lgoT
Position (kb) 1786
1787
1788 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1785.359 kb on - strand, within lgoD at 1785.359 kb on - strand, within lgoD at 1785.359 kb on - strand, within lgoD at 1785.374 kb on + strand, within lgoD at 1785.374 kb on + strand, within lgoD at 1785.412 kb on + strand, within lgoD at 1785.431 kb on - strand, within lgoD at 1785.431 kb on - strand, within lgoD at 1785.700 kb on + strand, within lgoD at 1785.700 kb on + strand, within lgoD at 1785.882 kb on + strand, within lgoD at 1785.926 kb on - strand, within lgoD at 1786.104 kb on - strand at 1786.127 kb on + strand at 1786.176 kb on - strand at 1786.176 kb on - strand at 1786.339 kb on + strand at 1786.339 kb on + strand at 1786.397 kb on + strand, within lgoR at 1786.398 kb on - strand, within lgoR at 1786.398 kb on - strand, within lgoR at 1786.398 kb on - strand, within lgoR at 1786.398 kb on - strand, within lgoR at 1786.398 kb on - strand, within lgoR at 1786.414 kb on + strand, within lgoR at 1786.415 kb on - strand, within lgoR at 1786.415 kb on - strand, within lgoR at 1786.426 kb on + strand, within lgoR at 1786.426 kb on + strand, within lgoR at 1786.427 kb on - strand, within lgoR at 1786.427 kb on - strand, within lgoR at 1786.459 kb on - strand, within lgoR at 1786.459 kb on - strand, within lgoR at 1786.459 kb on - strand, within lgoR at 1786.478 kb on + strand, within lgoR at 1786.478 kb on + strand, within lgoR at 1786.479 kb on - strand, within lgoR at 1786.479 kb on - strand, within lgoR at 1786.479 kb on - strand, within lgoR at 1786.483 kb on + strand, within lgoR at 1786.484 kb on - strand, within lgoR at 1786.484 kb on - strand, within lgoR at 1786.484 kb on - strand, within lgoR at 1786.484 kb on - strand, within lgoR at 1786.484 kb on - strand, within lgoR at 1786.493 kb on - strand, within lgoR at 1786.493 kb on - strand, within lgoR at 1786.523 kb on - strand, within lgoR at 1786.526 kb on - strand, within lgoR at 1786.582 kb on - strand, within lgoR at 1786.582 kb on - strand, within lgoR at 1786.692 kb on - strand, within lgoR at 1786.692 kb on - strand, within lgoR at 1786.694 kb on - strand, within lgoR at 1786.898 kb on - strand, within lgoR at 1787.071 kb on + strand, within lgoR at 1787.071 kb on + strand, within lgoR at 1787.072 kb on - strand, within lgoR at 1787.072 kb on - strand, within lgoR at 1787.199 kb on - strand at 1787.199 kb on - strand at 1787.202 kb on + strand at 1787.243 kb on + strand at 1787.401 kb on + strand at 1787.555 kb on - strand, within lgoT at 1787.578 kb on - strand, within lgoT at 1787.635 kb on + strand, within lgoT at 1787.713 kb on + strand, within lgoT at 1787.804 kb on + strand, within lgoT at 1787.805 kb on - strand, within lgoT at 1787.869 kb on + strand, within lgoT at 1787.869 kb on + strand, within lgoT at 1787.870 kb on - strand, within lgoT at 1787.940 kb on - strand, within lgoT at 1787.940 kb on - strand, within lgoT at 1787.956 kb on + strand, within lgoT at 1787.956 kb on + strand, within lgoT at 1788.012 kb on - strand, within lgoT at 1788.014 kb on + strand, within lgoT at 1788.014 kb on + strand, within lgoT at 1788.015 kb on - strand, within lgoT at 1788.026 kb on - strand, within lgoT at 1788.054 kb on + strand, within lgoT at 1788.054 kb on + strand, within lgoT at 1788.054 kb on + strand, within lgoT at 1788.054 kb on + strand, within lgoT at 1788.054 kb on + strand, within lgoT at 1788.055 kb on - strand, within lgoT at 1788.055 kb on - strand, within lgoT at 1788.055 kb on - strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.056 kb on + strand, within lgoT at 1788.057 kb on - strand, within lgoT at 1788.057 kb on - strand, within lgoT at 1788.057 kb on - strand, within lgoT at 1788.057 kb on - strand, within lgoT at 1788.057 kb on - strand, within lgoT at 1788.057 kb on - strand, within lgoT at 1788.057 kb on - strand, within lgoT at 1788.063 kb on + strand, within lgoT at 1788.083 kb on - strand, within lgoT at 1788.083 kb on - strand, within lgoT at 1788.083 kb on - strand, within lgoT at 1788.108 kb on + strand, within lgoT at 1788.108 kb on + strand, within lgoT at 1788.108 kb on + strand, within lgoT at 1788.108 kb on + strand, within lgoT at 1788.108 kb on + strand, within lgoT at 1788.108 kb on + strand, within lgoT at 1788.122 kb on + strand, within lgoT
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 1,785,359 - lgoD NIAGMN_09210 0.23 -0.5 1,785,359 - lgoD NIAGMN_09210 0.23 +1.0 1,785,359 - lgoD NIAGMN_09210 0.23 -0.8 1,785,374 + lgoD NIAGMN_09210 0.24 -0.4 1,785,374 + lgoD NIAGMN_09210 0.24 +0.7 1,785,412 + lgoD NIAGMN_09210 0.28 -1.3 1,785,431 - lgoD NIAGMN_09210 0.30 +0.2 1,785,431 - lgoD NIAGMN_09210 0.30 -1.3 1,785,700 + lgoD NIAGMN_09210 0.56 -0.0 1,785,700 + lgoD NIAGMN_09210 0.56 +0.9 1,785,882 + lgoD NIAGMN_09210 0.74 +0.7 1,785,926 - lgoD NIAGMN_09210 0.78 -0.2 1,786,104 - +1.0 1,786,127 + +1.1 1,786,176 - +1.0 1,786,176 - -0.1 1,786,339 + -1.1 1,786,339 + -0.1 1,786,397 + lgoR NIAGMN_09215 0.12 +0.4 1,786,398 - lgoR NIAGMN_09215 0.12 +0.8 1,786,398 - lgoR NIAGMN_09215 0.12 -1.1 1,786,398 - lgoR NIAGMN_09215 0.12 +0.4 1,786,398 - lgoR NIAGMN_09215 0.12 -2.0 1,786,398 - lgoR NIAGMN_09215 0.12 +0.7 1,786,414 + lgoR NIAGMN_09215 0.14 +0.9 1,786,415 - lgoR NIAGMN_09215 0.14 -0.8 1,786,415 - lgoR NIAGMN_09215 0.14 +1.4 1,786,426 + lgoR NIAGMN_09215 0.15 +1.5 1,786,426 + lgoR NIAGMN_09215 0.15 -0.2 1,786,427 - lgoR NIAGMN_09215 0.15 +1.0 1,786,427 - lgoR NIAGMN_09215 0.15 -0.8 1,786,459 - lgoR NIAGMN_09215 0.19 -1.0 1,786,459 - lgoR NIAGMN_09215 0.19 +1.3 1,786,459 - lgoR NIAGMN_09215 0.19 -0.0 1,786,478 + lgoR NIAGMN_09215 0.21 +0.6 1,786,478 + lgoR NIAGMN_09215 0.21 -0.3 1,786,479 - lgoR NIAGMN_09215 0.21 -1.7 1,786,479 - lgoR NIAGMN_09215 0.21 +0.0 1,786,479 - lgoR NIAGMN_09215 0.21 -0.4 1,786,483 + lgoR NIAGMN_09215 0.22 +1.2 1,786,484 - lgoR NIAGMN_09215 0.22 +0.4 1,786,484 - lgoR NIAGMN_09215 0.22 +2.6 1,786,484 - lgoR NIAGMN_09215 0.22 +0.8 1,786,484 - lgoR NIAGMN_09215 0.22 -0.7 1,786,484 - lgoR NIAGMN_09215 0.22 +2.0 1,786,493 - lgoR NIAGMN_09215 0.23 -1.0 1,786,493 - lgoR NIAGMN_09215 0.23 -0.9 1,786,523 - lgoR NIAGMN_09215 0.26 +1.1 1,786,526 - lgoR NIAGMN_09215 0.26 -2.4 1,786,582 - lgoR NIAGMN_09215 0.32 +1.0 1,786,582 - lgoR NIAGMN_09215 0.32 -0.6 1,786,692 - lgoR NIAGMN_09215 0.44 +0.4 1,786,692 - lgoR NIAGMN_09215 0.44 +0.2 1,786,694 - lgoR NIAGMN_09215 0.45 -0.7 1,786,898 - lgoR NIAGMN_09215 0.67 -1.9 1,787,071 + lgoR NIAGMN_09215 0.86 -0.5 1,787,071 + lgoR NIAGMN_09215 0.86 +2.0 1,787,072 - lgoR NIAGMN_09215 0.86 -0.7 1,787,072 - lgoR NIAGMN_09215 0.86 -0.9 1,787,199 - -0.0 1,787,199 - -1.2 1,787,202 + -0.5 1,787,243 + -0.8 1,787,401 + +1.1 1,787,555 - lgoT NIAGMN_09220 0.10 +1.0 1,787,578 - lgoT NIAGMN_09220 0.12 +0.5 1,787,635 + lgoT NIAGMN_09220 0.16 +0.1 1,787,713 + lgoT NIAGMN_09220 0.22 +1.4 1,787,804 + lgoT NIAGMN_09220 0.29 -0.3 1,787,805 - lgoT NIAGMN_09220 0.29 +2.0 1,787,869 + lgoT NIAGMN_09220 0.33 -2.0 1,787,869 + lgoT NIAGMN_09220 0.33 +0.8 1,787,870 - lgoT NIAGMN_09220 0.33 -0.5 1,787,940 - lgoT NIAGMN_09220 0.39 -0.6 1,787,940 - lgoT NIAGMN_09220 0.39 +0.4 1,787,956 + lgoT NIAGMN_09220 0.40 +0.4 1,787,956 + lgoT NIAGMN_09220 0.40 -0.5 1,788,012 - lgoT NIAGMN_09220 0.44 +1.0 1,788,014 + lgoT NIAGMN_09220 0.44 -1.2 1,788,014 + lgoT NIAGMN_09220 0.44 +0.9 1,788,015 - lgoT NIAGMN_09220 0.44 -0.2 1,788,026 - lgoT NIAGMN_09220 0.45 -0.2 1,788,054 + lgoT NIAGMN_09220 0.47 -1.0 1,788,054 + lgoT NIAGMN_09220 0.47 -1.2 1,788,054 + lgoT NIAGMN_09220 0.47 -2.5 1,788,054 + lgoT NIAGMN_09220 0.47 -0.4 1,788,054 + lgoT NIAGMN_09220 0.47 +0.3 1,788,055 - lgoT NIAGMN_09220 0.47 +0.3 1,788,055 - lgoT NIAGMN_09220 0.47 +0.6 1,788,055 - lgoT NIAGMN_09220 0.47 +0.6 1,788,056 + lgoT NIAGMN_09220 0.47 +1.4 1,788,056 + lgoT NIAGMN_09220 0.47 +0.6 1,788,056 + lgoT NIAGMN_09220 0.47 -1.4 1,788,056 + lgoT NIAGMN_09220 0.47 -0.3 1,788,056 + lgoT NIAGMN_09220 0.47 -0.1 1,788,056 + lgoT NIAGMN_09220 0.47 +0.4 1,788,056 + lgoT NIAGMN_09220 0.47 +0.1 1,788,056 + lgoT NIAGMN_09220 0.47 +0.1 1,788,056 + lgoT NIAGMN_09220 0.47 +0.4 1,788,056 + lgoT NIAGMN_09220 0.47 -0.2 1,788,057 - lgoT NIAGMN_09220 0.47 -0.6 1,788,057 - lgoT NIAGMN_09220 0.47 -0.8 1,788,057 - lgoT NIAGMN_09220 0.47 -1.3 1,788,057 - lgoT NIAGMN_09220 0.47 -0.5 1,788,057 - lgoT NIAGMN_09220 0.47 +2.0 1,788,057 - lgoT NIAGMN_09220 0.47 -0.5 1,788,057 - lgoT NIAGMN_09220 0.47 -0.2 1,788,063 + lgoT NIAGMN_09220 0.48 -0.0 1,788,083 - lgoT NIAGMN_09220 0.49 -0.6 1,788,083 - lgoT NIAGMN_09220 0.49 +0.2 1,788,083 - lgoT NIAGMN_09220 0.49 +1.0 1,788,108 + lgoT NIAGMN_09220 0.51 -1.2 1,788,108 + lgoT NIAGMN_09220 0.51 -0.6 1,788,108 + lgoT NIAGMN_09220 0.51 -1.0 1,788,108 + lgoT NIAGMN_09220 0.51 +0.3 1,788,108 + lgoT NIAGMN_09220 0.51 -0.0 1,788,108 + lgoT NIAGMN_09220 0.51 -1.9 1,788,122 + lgoT NIAGMN_09220 0.52 -0.8
Or see this region's nucleotide sequence