Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdxA and rsmA overlap by 4 nucleotides rsmA and apaG are separated by 2 nucleotides apaG and apaH are separated by 6 nucleotides apaH and NIAGMN_08700 overlap by 4 nucleotides
NIAGMN_08680: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,683,653 to 1,684,642
pdxA
NIAGMN_08685: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 1,684,639 to 1,685,460
rsmA
NIAGMN_08690: apaG - Co2+/Mg2+ efflux protein ApaG, at 1,685,463 to 1,685,840
apaG
NIAGMN_08695: apaH - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 1,685,847 to 1,686,695
apaH
NIAGMN_08700: NIAGMN_08700 - plasmid maintenance protein CcdB, at 1,686,692 to 1,687,006
_08700
Position (kb) 1685
1686 Strain fitness (log2 ratio) -1
0
1
2 at 1684.475 kb on + strand, within pdxA at 1684.522 kb on + strand, within pdxA at 1684.594 kb on + strand at 1685.134 kb on + strand, within rsmA at 1685.458 kb on + strand at 1685.505 kb on + strand, within apaG at 1685.505 kb on + strand, within apaG at 1685.505 kb on + strand, within apaG at 1685.506 kb on - strand, within apaG at 1685.553 kb on + strand, within apaG at 1685.553 kb on + strand, within apaG at 1685.555 kb on + strand, within apaG at 1685.555 kb on + strand, within apaG at 1685.566 kb on + strand, within apaG at 1685.681 kb on + strand, within apaG at 1685.700 kb on + strand, within apaG at 1685.706 kb on + strand, within apaG at 1685.706 kb on + strand, within apaG at 1685.707 kb on - strand, within apaG at 1685.839 kb on - strand at 1685.856 kb on + strand at 1685.856 kb on + strand at 1685.857 kb on - strand at 1685.883 kb on + strand at 1685.910 kb on - strand at 1686.022 kb on + strand, within apaH at 1686.022 kb on + strand, within apaH at 1686.022 kb on + strand, within apaH at 1686.023 kb on - strand, within apaH at 1686.065 kb on - strand, within apaH at 1686.429 kb on + strand, within apaH at 1686.429 kb on + strand, within apaH at 1686.429 kb on + strand, within apaH at 1686.563 kb on + strand, within apaH at 1686.626 kb on + strand at 1686.659 kb on + strand at 1686.659 kb on + strand at 1686.693 kb on + strand at 1686.694 kb on - strand at 1686.694 kb on - strand at 1686.694 kb on - strand at 1686.710 kb on - strand at 1686.717 kb on - strand at 1686.816 kb on + strand, within NIAGMN_08700 at 1686.816 kb on + strand, within NIAGMN_08700 at 1686.816 kb on + strand, within NIAGMN_08700 at 1686.816 kb on + strand, within NIAGMN_08700 at 1686.816 kb on + strand, within NIAGMN_08700 at 1686.817 kb on - strand, within NIAGMN_08700 at 1686.830 kb on + strand, within NIAGMN_08700 at 1686.836 kb on + strand, within NIAGMN_08700 at 1686.837 kb on - strand, within NIAGMN_08700 at 1686.837 kb on - strand, within NIAGMN_08700
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 1,684,475 + pdxA NIAGMN_08680 0.83 +2.0 1,684,522 + pdxA NIAGMN_08680 0.88 +0.8 1,684,594 + +0.1 1,685,134 + rsmA NIAGMN_08685 0.60 -0.0 1,685,458 + -0.4 1,685,505 + apaG NIAGMN_08690 0.11 +2.0 1,685,505 + apaG NIAGMN_08690 0.11 -0.7 1,685,505 + apaG NIAGMN_08690 0.11 -1.0 1,685,506 - apaG NIAGMN_08690 0.11 +1.4 1,685,553 + apaG NIAGMN_08690 0.24 -0.8 1,685,553 + apaG NIAGMN_08690 0.24 -0.6 1,685,555 + apaG NIAGMN_08690 0.24 +0.6 1,685,555 + apaG NIAGMN_08690 0.24 -0.0 1,685,566 + apaG NIAGMN_08690 0.27 +0.3 1,685,681 + apaG NIAGMN_08690 0.58 +0.6 1,685,700 + apaG NIAGMN_08690 0.63 -0.0 1,685,706 + apaG NIAGMN_08690 0.64 +0.4 1,685,706 + apaG NIAGMN_08690 0.64 +0.3 1,685,707 - apaG NIAGMN_08690 0.65 -1.2 1,685,839 - -1.0 1,685,856 + +2.0 1,685,856 + +0.4 1,685,857 - +2.0 1,685,883 + +0.4 1,685,910 - +2.0 1,686,022 + apaH NIAGMN_08695 0.21 +0.7 1,686,022 + apaH NIAGMN_08695 0.21 -0.6 1,686,022 + apaH NIAGMN_08695 0.21 -0.3 1,686,023 - apaH NIAGMN_08695 0.21 +1.0 1,686,065 - apaH NIAGMN_08695 0.26 +1.0 1,686,429 + apaH NIAGMN_08695 0.69 +2.0 1,686,429 + apaH NIAGMN_08695 0.69 +2.0 1,686,429 + apaH NIAGMN_08695 0.69 -0.3 1,686,563 + apaH NIAGMN_08695 0.84 +2.0 1,686,626 + +0.7 1,686,659 + +1.0 1,686,659 + +0.7 1,686,693 + +0.5 1,686,694 - +0.2 1,686,694 - +1.5 1,686,694 - -0.3 1,686,710 - -0.8 1,686,717 - -0.6 1,686,816 + NIAGMN_08700 0.39 -0.3 1,686,816 + NIAGMN_08700 0.39 +0.7 1,686,816 + NIAGMN_08700 0.39 +2.0 1,686,816 + NIAGMN_08700 0.39 +1.0 1,686,816 + NIAGMN_08700 0.39 -0.1 1,686,817 - NIAGMN_08700 0.40 +0.2 1,686,830 + NIAGMN_08700 0.44 -1.2 1,686,836 + NIAGMN_08700 0.46 -0.3 1,686,837 - NIAGMN_08700 0.46 -1.4 1,686,837 - NIAGMN_08700 0.46 +0.9
Or see this region's nucleotide sequence