Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_07655 and NIAGMN_07660 are separated by 180 nucleotides NIAGMN_07660 and NIAGMN_07665 are separated by 47 nucleotides NIAGMN_07665 and rhsA overlap by 17 nucleotides
NIAGMN_07655: NIAGMN_07655 - ISAs1-like element ISEc26 family transposase, at 1,464,675 to 1,465,847
_07655
NIAGMN_07660: NIAGMN_07660 - dCTP deaminase, at 1,466,028 to 1,466,291
_07660
NIAGMN_07665: NIAGMN_07665 - YdcD, at 1,466,339 to 1,466,509
_07665
NIAGMN_07670: rhsA - RHS repeat protein, at 1,466,493 to 1,468,253
rhsA
Position (kb) 1466
1467 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1465.746 kb on + strand at 1465.801 kb on - strand at 1465.902 kb on + strand at 1465.934 kb on + strand at 1465.996 kb on - strand at 1465.996 kb on - strand at 1466.184 kb on - strand, within NIAGMN_07660 at 1466.371 kb on - strand, within NIAGMN_07665 at 1466.371 kb on - strand, within NIAGMN_07665 at 1466.584 kb on + strand at 1466.722 kb on - strand, within rhsA at 1466.733 kb on + strand, within rhsA at 1466.773 kb on + strand, within rhsA at 1466.779 kb on + strand, within rhsA at 1466.822 kb on + strand, within rhsA at 1466.823 kb on - strand, within rhsA at 1466.849 kb on - strand, within rhsA at 1466.858 kb on + strand, within rhsA at 1466.859 kb on - strand, within rhsA at 1466.861 kb on + strand, within rhsA at 1466.861 kb on + strand, within rhsA at 1466.862 kb on - strand, within rhsA at 1466.905 kb on + strand, within rhsA at 1466.905 kb on + strand, within rhsA at 1466.905 kb on + strand, within rhsA at 1466.910 kb on + strand, within rhsA at 1466.943 kb on + strand, within rhsA at 1466.944 kb on - strand, within rhsA at 1466.944 kb on - strand, within rhsA at 1466.967 kb on + strand, within rhsA at 1466.989 kb on + strand, within rhsA at 1466.989 kb on + strand, within rhsA at 1466.989 kb on + strand, within rhsA at 1466.989 kb on + strand, within rhsA at 1466.989 kb on + strand, within rhsA at 1466.990 kb on - strand, within rhsA at 1466.990 kb on - strand, within rhsA at 1466.990 kb on - strand, within rhsA at 1466.993 kb on + strand, within rhsA at 1466.993 kb on + strand, within rhsA at 1466.994 kb on - strand, within rhsA at 1466.994 kb on - strand, within rhsA at 1466.994 kb on - strand, within rhsA at 1466.994 kb on - strand, within rhsA at 1467.032 kb on + strand, within rhsA at 1467.032 kb on + strand, within rhsA at 1467.032 kb on + strand, within rhsA at 1467.032 kb on + strand, within rhsA at 1467.033 kb on - strand, within rhsA at 1467.034 kb on + strand, within rhsA at 1467.035 kb on - strand, within rhsA at 1467.035 kb on - strand, within rhsA at 1467.055 kb on + strand, within rhsA at 1467.056 kb on - strand, within rhsA at 1467.071 kb on + strand, within rhsA at 1467.072 kb on - strand, within rhsA at 1467.072 kb on - strand, within rhsA at 1467.073 kb on + strand, within rhsA at 1467.073 kb on + strand, within rhsA at 1467.073 kb on + strand, within rhsA at 1467.073 kb on + strand, within rhsA at 1467.074 kb on - strand, within rhsA at 1467.074 kb on - strand, within rhsA at 1467.074 kb on - strand, within rhsA at 1467.074 kb on - strand, within rhsA at 1467.076 kb on + strand, within rhsA at 1467.077 kb on - strand, within rhsA at 1467.152 kb on + strand, within rhsA at 1467.152 kb on + strand, within rhsA at 1467.175 kb on + strand, within rhsA
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 1,465,746 + +1.9 1,465,801 - +0.6 1,465,902 + -0.6 1,465,934 + -0.5 1,465,996 - +0.7 1,465,996 - +1.3 1,466,184 - NIAGMN_07660 0.59 -0.7 1,466,371 - NIAGMN_07665 0.19 -0.5 1,466,371 - NIAGMN_07665 0.19 -2.3 1,466,584 + +1.9 1,466,722 - rhsA NIAGMN_07670 0.13 +0.0 1,466,733 + rhsA NIAGMN_07670 0.14 +1.2 1,466,773 + rhsA NIAGMN_07670 0.16 +0.9 1,466,779 + rhsA NIAGMN_07670 0.16 -0.4 1,466,822 + rhsA NIAGMN_07670 0.19 +1.7 1,466,823 - rhsA NIAGMN_07670 0.19 -1.4 1,466,849 - rhsA NIAGMN_07670 0.20 -0.8 1,466,858 + rhsA NIAGMN_07670 0.21 -0.5 1,466,859 - rhsA NIAGMN_07670 0.21 +0.7 1,466,861 + rhsA NIAGMN_07670 0.21 -0.4 1,466,861 + rhsA NIAGMN_07670 0.21 -0.2 1,466,862 - rhsA NIAGMN_07670 0.21 -0.4 1,466,905 + rhsA NIAGMN_07670 0.23 +2.5 1,466,905 + rhsA NIAGMN_07670 0.23 -0.5 1,466,905 + rhsA NIAGMN_07670 0.23 +0.3 1,466,910 + rhsA NIAGMN_07670 0.24 -1.4 1,466,943 + rhsA NIAGMN_07670 0.26 -0.2 1,466,944 - rhsA NIAGMN_07670 0.26 -0.8 1,466,944 - rhsA NIAGMN_07670 0.26 +0.1 1,466,967 + rhsA NIAGMN_07670 0.27 -0.4 1,466,989 + rhsA NIAGMN_07670 0.28 -0.9 1,466,989 + rhsA NIAGMN_07670 0.28 -0.9 1,466,989 + rhsA NIAGMN_07670 0.28 -0.4 1,466,989 + rhsA NIAGMN_07670 0.28 +0.9 1,466,989 + rhsA NIAGMN_07670 0.28 -0.4 1,466,990 - rhsA NIAGMN_07670 0.28 -0.9 1,466,990 - rhsA NIAGMN_07670 0.28 -0.4 1,466,990 - rhsA NIAGMN_07670 0.28 -0.1 1,466,993 + rhsA NIAGMN_07670 0.28 -2.5 1,466,993 + rhsA NIAGMN_07670 0.28 -0.9 1,466,994 - rhsA NIAGMN_07670 0.28 -1.7 1,466,994 - rhsA NIAGMN_07670 0.28 -0.1 1,466,994 - rhsA NIAGMN_07670 0.28 -0.1 1,466,994 - rhsA NIAGMN_07670 0.28 -1.2 1,467,032 + rhsA NIAGMN_07670 0.31 +1.0 1,467,032 + rhsA NIAGMN_07670 0.31 +0.9 1,467,032 + rhsA NIAGMN_07670 0.31 -1.4 1,467,032 + rhsA NIAGMN_07670 0.31 -0.5 1,467,033 - rhsA NIAGMN_07670 0.31 -0.9 1,467,034 + rhsA NIAGMN_07670 0.31 -1.2 1,467,035 - rhsA NIAGMN_07670 0.31 +0.1 1,467,035 - rhsA NIAGMN_07670 0.31 +0.9 1,467,055 + rhsA NIAGMN_07670 0.32 +0.3 1,467,056 - rhsA NIAGMN_07670 0.32 +0.1 1,467,071 + rhsA NIAGMN_07670 0.33 +0.9 1,467,072 - rhsA NIAGMN_07670 0.33 +0.3 1,467,072 - rhsA NIAGMN_07670 0.33 +0.1 1,467,073 + rhsA NIAGMN_07670 0.33 +1.9 1,467,073 + rhsA NIAGMN_07670 0.33 -0.8 1,467,073 + rhsA NIAGMN_07670 0.33 +1.9 1,467,073 + rhsA NIAGMN_07670 0.33 +1.2 1,467,074 - rhsA NIAGMN_07670 0.33 +0.4 1,467,074 - rhsA NIAGMN_07670 0.33 +0.1 1,467,074 - rhsA NIAGMN_07670 0.33 +0.6 1,467,074 - rhsA NIAGMN_07670 0.33 +0.2 1,467,076 + rhsA NIAGMN_07670 0.33 -0.1 1,467,077 - rhsA NIAGMN_07670 0.33 +0.9 1,467,152 + rhsA NIAGMN_07670 0.37 -0.5 1,467,152 + rhsA NIAGMN_07670 0.37 +1.4 1,467,175 + rhsA NIAGMN_07670 0.39 -0.3
Or see this region's nucleotide sequence