Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mak and rdgC are separated by 58 nucleotides rdgC and NIAGMN_06630 are separated by 84 nucleotides NIAGMN_06630 and NIAGMN_06635 overlap by 4 nucleotides
NIAGMN_06620: mak - fructokinase, at 1,267,593 to 1,268,501
mak
NIAGMN_06625: rdgC - recombination-associated protein RdgC, at 1,268,560 to 1,269,537
rdgC
NIAGMN_06630: NIAGMN_06630 - hypothetical protein, at 1,269,622 to 1,270,071
_06630
NIAGMN_06635: NIAGMN_06635 - Protein involved in detoxification of methylglyoxal, at 1,270,068 to 1,272,347
_06635
Position (kb) 1268
1269
1270 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1267.626 kb on + strand at 1267.697 kb on + strand, within mak at 1267.721 kb on - strand, within mak at 1267.722 kb on + strand, within mak at 1267.723 kb on - strand, within mak at 1267.723 kb on - strand, within mak at 1267.779 kb on - strand, within mak at 1267.952 kb on + strand, within mak at 1267.952 kb on + strand, within mak at 1267.953 kb on - strand, within mak at 1267.972 kb on + strand, within mak at 1268.157 kb on + strand, within mak at 1268.158 kb on - strand, within mak at 1268.158 kb on - strand, within mak at 1268.158 kb on - strand, within mak at 1268.158 kb on - strand, within mak at 1268.226 kb on + strand, within mak at 1268.226 kb on + strand, within mak at 1268.226 kb on + strand, within mak at 1268.227 kb on - strand, within mak at 1268.291 kb on - strand, within mak at 1268.318 kb on + strand, within mak at 1268.323 kb on - strand, within mak at 1268.323 kb on - strand, within mak at 1268.384 kb on + strand, within mak at 1268.385 kb on - strand, within mak at 1268.429 kb on - strand at 1268.482 kb on - strand at 1268.494 kb on - strand at 1268.494 kb on - strand at 1268.495 kb on + strand at 1268.496 kb on - strand at 1268.537 kb on - strand at 1268.596 kb on - strand at 1268.623 kb on - strand at 1268.821 kb on - strand, within rdgC at 1268.865 kb on + strand, within rdgC at 1268.916 kb on + strand, within rdgC at 1268.916 kb on + strand, within rdgC at 1269.090 kb on + strand, within rdgC at 1269.090 kb on + strand, within rdgC at 1269.117 kb on - strand, within rdgC at 1269.491 kb on + strand at 1269.515 kb on + strand at 1269.516 kb on - strand at 1269.535 kb on + strand at 1269.535 kb on + strand at 1269.536 kb on - strand at 1269.591 kb on + strand at 1269.613 kb on - strand at 1269.617 kb on - strand at 1269.617 kb on - strand at 1269.742 kb on - strand, within NIAGMN_06630 at 1269.790 kb on - strand, within NIAGMN_06630 at 1269.922 kb on - strand, within NIAGMN_06630 at 1270.031 kb on + strand at 1270.031 kb on + strand at 1270.174 kb on - strand at 1270.174 kb on - strand at 1270.238 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 1,267,626 + +0.9 1,267,697 + mak NIAGMN_06620 0.11 +0.1 1,267,721 - mak NIAGMN_06620 0.14 -1.1 1,267,722 + mak NIAGMN_06620 0.14 -0.4 1,267,723 - mak NIAGMN_06620 0.14 +0.0 1,267,723 - mak NIAGMN_06620 0.14 +0.6 1,267,779 - mak NIAGMN_06620 0.20 -1.6 1,267,952 + mak NIAGMN_06620 0.39 +2.2 1,267,952 + mak NIAGMN_06620 0.39 -0.4 1,267,953 - mak NIAGMN_06620 0.40 -1.4 1,267,972 + mak NIAGMN_06620 0.42 +2.9 1,268,157 + mak NIAGMN_06620 0.62 +0.2 1,268,158 - mak NIAGMN_06620 0.62 +0.6 1,268,158 - mak NIAGMN_06620 0.62 +0.7 1,268,158 - mak NIAGMN_06620 0.62 -0.1 1,268,158 - mak NIAGMN_06620 0.62 -0.7 1,268,226 + mak NIAGMN_06620 0.70 +0.5 1,268,226 + mak NIAGMN_06620 0.70 -1.1 1,268,226 + mak NIAGMN_06620 0.70 -0.1 1,268,227 - mak NIAGMN_06620 0.70 +0.5 1,268,291 - mak NIAGMN_06620 0.77 -2.5 1,268,318 + mak NIAGMN_06620 0.80 -0.7 1,268,323 - mak NIAGMN_06620 0.80 -0.3 1,268,323 - mak NIAGMN_06620 0.80 +0.9 1,268,384 + mak NIAGMN_06620 0.87 +0.0 1,268,385 - mak NIAGMN_06620 0.87 -0.1 1,268,429 - -0.2 1,268,482 - +0.0 1,268,494 - +0.4 1,268,494 - +0.5 1,268,495 + +0.5 1,268,496 - +0.9 1,268,537 - -0.1 1,268,596 - -0.1 1,268,623 - +0.6 1,268,821 - rdgC NIAGMN_06625 0.27 -1.7 1,268,865 + rdgC NIAGMN_06625 0.31 +2.5 1,268,916 + rdgC NIAGMN_06625 0.36 -0.7 1,268,916 + rdgC NIAGMN_06625 0.36 -0.3 1,269,090 + rdgC NIAGMN_06625 0.54 +0.3 1,269,090 + rdgC NIAGMN_06625 0.54 +0.1 1,269,117 - rdgC NIAGMN_06625 0.57 -1.6 1,269,491 + -0.9 1,269,515 + -0.4 1,269,516 - -0.1 1,269,535 + -0.4 1,269,535 + -0.6 1,269,536 - -0.9 1,269,591 + +0.3 1,269,613 - -1.4 1,269,617 - -0.0 1,269,617 - -0.7 1,269,742 - NIAGMN_06630 0.27 -0.9 1,269,790 - NIAGMN_06630 0.37 +0.4 1,269,922 - NIAGMN_06630 0.67 +1.5 1,270,031 + -0.9 1,270,031 + +0.3 1,270,174 - -0.1 1,270,174 - +1.6 1,270,238 + +2.5
Or see this region's nucleotide sequence