Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05450

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlipB and ybeF are separated by 259 nucleotidesybeF and lipA are separated by 208 nucleotides NIAGMN_05445: lipB - lipoyl(octanoyl) transferase LipB, at 997,405 to 998,046 lipB NIAGMN_05450: ybeF - YbeF family transcriptional regulator, at 998,306 to 999,259 ybeF NIAGMN_05455: lipA - lipoyl synthase, at 999,468 to 1,000,433 lipA Position (kb) 998 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1at 998.580 kb on + strand, within ybeFat 998.581 kb on - strand, within ybeFat 998.581 kb on - strand, within ybeFat 998.581 kb on - strand, within ybeFat 998.589 kb on - strand, within ybeFat 998.591 kb on - strand, within ybeFat 998.591 kb on - strand, within ybeFat 998.591 kb on - strand, within ybeFat 998.665 kb on + strand, within ybeFat 998.811 kb on + strand, within ybeFat 998.811 kb on + strand, within ybeFat 998.811 kb on + strand, within ybeFat 998.812 kb on - strand, within ybeFat 998.815 kb on + strand, within ybeFat 998.816 kb on - strand, within ybeFat 998.949 kb on + strand, within ybeFat 998.949 kb on + strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 998.950 kb on - strand, within ybeFat 999.039 kb on - strand, within ybeFat 999.231 kb on + strandat 999.234 kb on + strandat 999.235 kb on - strandat 999.235 kb on - strandat 999.235 kb on - strandat 999.235 kb on - strandat 999.235 kb on - strandat 999.265 kb on + strandat 999.370 kb on + strandat 999.370 kb on + strandat 999.371 kb on - strandat 999.372 kb on + strandat 999.372 kb on + strandat 999.372 kb on + strandat 999.372 kb on + strandat 999.372 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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998,580 + ybeF NIAGMN_05450 0.29 -0.2
998,581 - ybeF NIAGMN_05450 0.29 +1.2
998,581 - ybeF NIAGMN_05450 0.29 +0.8
998,581 - ybeF NIAGMN_05450 0.29 +0.5
998,589 - ybeF NIAGMN_05450 0.30 +0.8
998,591 - ybeF NIAGMN_05450 0.30 -1.5
998,591 - ybeF NIAGMN_05450 0.30 -0.7
998,591 - ybeF NIAGMN_05450 0.30 +0.7
998,665 + ybeF NIAGMN_05450 0.38 +0.5
998,811 + ybeF NIAGMN_05450 0.53 -0.2
998,811 + ybeF NIAGMN_05450 0.53 -0.7
998,811 + ybeF NIAGMN_05450 0.53 -0.8
998,812 - ybeF NIAGMN_05450 0.53 +0.8
998,815 + ybeF NIAGMN_05450 0.53 +0.4
998,816 - ybeF NIAGMN_05450 0.53 +1.4
998,949 + ybeF NIAGMN_05450 0.67 +0.6
998,949 + ybeF NIAGMN_05450 0.67 +0.2
998,950 - ybeF NIAGMN_05450 0.68 -0.8
998,950 - ybeF NIAGMN_05450 0.68 -1.7
998,950 - ybeF NIAGMN_05450 0.68 -2.0
998,950 - ybeF NIAGMN_05450 0.68 +0.8
998,950 - ybeF NIAGMN_05450 0.68 +0.8
998,950 - ybeF NIAGMN_05450 0.68 -0.1
998,950 - ybeF NIAGMN_05450 0.68 -2.0
998,950 - ybeF NIAGMN_05450 0.68 -1.0
998,950 - ybeF NIAGMN_05450 0.68 +0.5
998,950 - ybeF NIAGMN_05450 0.68 -0.6
999,039 - ybeF NIAGMN_05450 0.77 -1.0
999,231 + -0.2
999,234 + +0.2
999,235 - -0.2
999,235 - -0.5
999,235 - -2.9
999,235 - -0.5
999,235 - -0.3
999,265 + +1.2
999,370 + +0.2
999,370 + +0.6
999,371 - -0.0
999,372 + -0.5
999,372 + -1.0
999,372 + +0.2
999,372 + +0.0
999,372 + -1.5

Or see this region's nucleotide sequence