Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt miaB and ybeZ are separated by 113 nucleotides ybeZ and ybeY overlap by 4 nucleotides ybeY and corC are separated by 89 nucleotides
NIAGMN_05280: miaB - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 965,924 to 967,348
miaB
NIAGMN_05285: ybeZ - PhoH-like protein, at 967,462 to 968,541
ybeZ
NIAGMN_05290: ybeY - rRNA maturation RNase YbeY, at 968,538 to 969,005
ybeY
NIAGMN_05295: corC - CNNM family magnesium/cobalt transport protein CorC, at 969,095 to 969,973
corC
Position (kb) 967
968
969 Strain fitness (log2 ratio) -2
-1
0
1
2 at 966.632 kb on - strand, within miaB at 966.761 kb on - strand, within miaB at 966.932 kb on - strand, within miaB at 966.932 kb on - strand, within miaB at 967.012 kb on + strand, within miaB at 967.028 kb on - strand, within miaB at 967.082 kb on - strand, within miaB at 967.096 kb on + strand, within miaB at 967.096 kb on + strand, within miaB at 967.096 kb on + strand, within miaB at 967.097 kb on - strand, within miaB at 967.097 kb on - strand, within miaB at 967.097 kb on - strand, within miaB at 967.097 kb on - strand, within miaB at 967.183 kb on + strand, within miaB at 967.184 kb on - strand, within miaB at 967.214 kb on + strand at 967.334 kb on + strand at 967.334 kb on + strand at 967.337 kb on + strand at 967.337 kb on + strand at 967.392 kb on + strand at 967.440 kb on + strand at 967.440 kb on + strand at 967.451 kb on + strand at 967.482 kb on + strand at 967.482 kb on + strand at 967.488 kb on + strand at 967.699 kb on + strand, within ybeZ at 967.830 kb on + strand, within ybeZ at 967.882 kb on + strand, within ybeZ at 967.911 kb on + strand, within ybeZ at 968.182 kb on + strand, within ybeZ at 968.182 kb on + strand, within ybeZ at 968.182 kb on + strand, within ybeZ at 968.184 kb on + strand, within ybeZ at 968.196 kb on + strand, within ybeZ at 968.214 kb on + strand, within ybeZ at 968.334 kb on + strand, within ybeZ at 968.334 kb on + strand, within ybeZ at 968.337 kb on + strand, within ybeZ at 968.337 kb on + strand, within ybeZ at 968.340 kb on + strand, within ybeZ at 968.351 kb on + strand, within ybeZ at 968.458 kb on + strand at 968.985 kb on + strand at 969.003 kb on + strand at 969.049 kb on + strand at 969.071 kb on + strand at 969.071 kb on + strand at 969.071 kb on + strand at 969.118 kb on + strand at 969.241 kb on + strand, within corC at 969.538 kb on + strand, within corC
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 966,632 - miaB NIAGMN_05280 0.50 +2.4 966,761 - miaB NIAGMN_05280 0.59 -0.1 966,932 - miaB NIAGMN_05280 0.71 +0.2 966,932 - miaB NIAGMN_05280 0.71 -0.5 967,012 + miaB NIAGMN_05280 0.76 -0.7 967,028 - miaB NIAGMN_05280 0.77 +0.8 967,082 - miaB NIAGMN_05280 0.81 -0.5 967,096 + miaB NIAGMN_05280 0.82 +0.2 967,096 + miaB NIAGMN_05280 0.82 +1.2 967,096 + miaB NIAGMN_05280 0.82 -0.2 967,097 - miaB NIAGMN_05280 0.82 +1.2 967,097 - miaB NIAGMN_05280 0.82 +0.2 967,097 - miaB NIAGMN_05280 0.82 +1.4 967,097 - miaB NIAGMN_05280 0.82 +0.2 967,183 + miaB NIAGMN_05280 0.88 -0.3 967,184 - miaB NIAGMN_05280 0.88 -0.5 967,214 + +2.4 967,334 + -0.2 967,334 + +2.4 967,337 + +0.8 967,337 + -0.7 967,392 + -0.2 967,440 + +1.2 967,440 + -2.0 967,451 + +0.9 967,482 + -2.0 967,482 + +1.1 967,488 + +0.2 967,699 + ybeZ NIAGMN_05285 0.22 -0.2 967,830 + ybeZ NIAGMN_05285 0.34 -0.5 967,882 + ybeZ NIAGMN_05285 0.39 -2.1 967,911 + ybeZ NIAGMN_05285 0.42 -0.1 968,182 + ybeZ NIAGMN_05285 0.67 +0.8 968,182 + ybeZ NIAGMN_05285 0.67 -1.2 968,182 + ybeZ NIAGMN_05285 0.67 -0.1 968,184 + ybeZ NIAGMN_05285 0.67 -1.0 968,196 + ybeZ NIAGMN_05285 0.68 -1.3 968,214 + ybeZ NIAGMN_05285 0.70 -0.2 968,334 + ybeZ NIAGMN_05285 0.81 +1.0 968,334 + ybeZ NIAGMN_05285 0.81 +0.8 968,337 + ybeZ NIAGMN_05285 0.81 +1.2 968,337 + ybeZ NIAGMN_05285 0.81 -0.2 968,340 + ybeZ NIAGMN_05285 0.81 -0.8 968,351 + ybeZ NIAGMN_05285 0.82 -1.4 968,458 + -0.2 968,985 + -0.9 969,003 + -1.4 969,049 + +0.8 969,071 + -2.2 969,071 + +0.2 969,071 + +0.6 969,118 + -1.0 969,241 + corC NIAGMN_05295 0.17 +0.8 969,538 + corC NIAGMN_05295 0.50 +0.8
Or see this region's nucleotide sequence