Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acrZ and modE are separated by 128 nucleotides modE and modF are separated by 67 nucleotides modF and galT are separated by 261 nucleotides
NIAGMN_04750: acrZ - multidrug efflux pump accessory protein AcrZ, at 862,245 to 862,394
acrZ
NIAGMN_04755: modE - molybdenum-dependent transcriptional regulator, at 862,523 to 863,311
modE
NIAGMN_04760: modF - molybdate ABC transporter ATP-binding protein ModF, at 863,379 to 864,851
modF
NIAGMN_04765: galT - galactose-1-phosphate uridylyltransferase, at 865,113 to 866,129
galT
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 862.381 kb on - strand at 862.390 kb on - strand at 862.390 kb on - strand at 862.390 kb on - strand at 862.409 kb on - strand at 862.409 kb on - strand at 862.410 kb on + strand at 862.411 kb on - strand at 862.411 kb on - strand at 862.411 kb on - strand at 862.411 kb on - strand at 862.422 kb on + strand at 862.423 kb on - strand at 862.434 kb on + strand at 862.500 kb on - strand at 862.523 kb on - strand at 862.523 kb on - strand at 862.550 kb on - strand at 862.596 kb on + strand at 862.597 kb on - strand at 862.655 kb on + strand, within modE at 862.656 kb on - strand, within modE at 862.656 kb on - strand, within modE at 862.658 kb on - strand, within modE at 862.658 kb on - strand, within modE at 862.705 kb on + strand, within modE at 862.705 kb on + strand, within modE at 862.705 kb on + strand, within modE at 862.706 kb on - strand, within modE at 862.764 kb on - strand, within modE at 862.788 kb on - strand, within modE at 862.788 kb on - strand, within modE at 862.794 kb on + strand, within modE at 862.795 kb on - strand, within modE at 862.971 kb on + strand, within modE at 863.008 kb on + strand, within modE at 863.061 kb on + strand, within modE at 863.089 kb on + strand, within modE at 863.090 kb on - strand, within modE at 863.137 kb on + strand, within modE at 863.140 kb on + strand, within modE at 863.140 kb on + strand, within modE at 863.140 kb on + strand, within modE at 863.141 kb on - strand, within modE at 863.141 kb on - strand, within modE at 863.143 kb on + strand, within modE at 863.143 kb on + strand, within modE at 863.149 kb on + strand, within modE at 863.178 kb on + strand, within modE at 863.270 kb on + strand at 863.417 kb on + strand at 863.781 kb on + strand, within modF at 863.921 kb on - strand, within modF at 863.936 kb on + strand, within modF at 863.936 kb on + strand, within modF at 863.937 kb on - strand, within modF at 863.937 kb on - strand, within modF at 864.078 kb on - strand, within modF at 864.078 kb on - strand, within modF at 864.187 kb on - strand, within modF at 864.189 kb on - strand, within modF at 864.206 kb on + strand, within modF at 864.207 kb on - strand, within modF at 864.207 kb on - strand, within modF at 864.210 kb on - strand, within modF at 864.216 kb on - strand, within modF at 864.216 kb on - strand, within modF at 864.283 kb on + strand, within modF at 864.284 kb on - strand, within modF at 864.435 kb on - strand, within modF at 864.438 kb on - strand, within modF at 864.578 kb on + strand, within modF at 864.578 kb on + strand, within modF at 864.579 kb on - strand, within modF at 864.696 kb on - strand, within modF at 864.782 kb on + strand at 864.782 kb on + strand at 864.828 kb on + strand at 864.828 kb on + strand at 864.845 kb on - strand at 864.850 kb on - strand at 865.070 kb on + strand at 865.082 kb on - strand at 865.093 kb on + strand at 865.214 kb on + strand at 865.221 kb on - strand, within galT at 865.221 kb on - strand, within galT at 865.232 kb on - strand, within galT at 865.398 kb on + strand, within galT at 865.519 kb on - strand, within galT at 865.558 kb on - strand, within galT at 865.558 kb on - strand, within galT at 865.713 kb on - strand, within galT at 865.719 kb on + strand, within galT at 865.719 kb on + strand, within galT at 865.720 kb on - strand, within galT at 865.809 kb on + strand, within galT at 865.809 kb on + strand, within galT at 865.810 kb on - strand, within galT at 865.820 kb on - strand, within galT at 865.820 kb on - strand, within galT
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 862,381 - +1.2 862,390 - +0.7 862,390 - +0.8 862,390 - -1.4 862,409 - +1.0 862,409 - +0.2 862,410 + -0.6 862,411 - +0.8 862,411 - +0.2 862,411 - -1.2 862,411 - +0.4 862,422 + +1.8 862,423 - -1.1 862,434 + +1.3 862,500 - +1.0 862,523 - +1.5 862,523 - +0.5 862,550 - -1.9 862,596 + +1.4 862,597 - -0.8 862,655 + modE NIAGMN_04755 0.17 -1.6 862,656 - modE NIAGMN_04755 0.17 +0.4 862,656 - modE NIAGMN_04755 0.17 +3.8 862,658 - modE NIAGMN_04755 0.17 +1.4 862,658 - modE NIAGMN_04755 0.17 -0.2 862,705 + modE NIAGMN_04755 0.23 +0.9 862,705 + modE NIAGMN_04755 0.23 -1.0 862,705 + modE NIAGMN_04755 0.23 +0.9 862,706 - modE NIAGMN_04755 0.23 +0.6 862,764 - modE NIAGMN_04755 0.31 -0.3 862,788 - modE NIAGMN_04755 0.34 +0.2 862,788 - modE NIAGMN_04755 0.34 -0.4 862,794 + modE NIAGMN_04755 0.34 +0.8 862,795 - modE NIAGMN_04755 0.34 +0.5 862,971 + modE NIAGMN_04755 0.57 -0.2 863,008 + modE NIAGMN_04755 0.61 -0.4 863,061 + modE NIAGMN_04755 0.68 +1.1 863,089 + modE NIAGMN_04755 0.72 +0.9 863,090 - modE NIAGMN_04755 0.72 -0.2 863,137 + modE NIAGMN_04755 0.78 -0.1 863,140 + modE NIAGMN_04755 0.78 -1.4 863,140 + modE NIAGMN_04755 0.78 -1.2 863,140 + modE NIAGMN_04755 0.78 +0.1 863,141 - modE NIAGMN_04755 0.78 +0.8 863,141 - modE NIAGMN_04755 0.78 -0.2 863,143 + modE NIAGMN_04755 0.79 +0.2 863,143 + modE NIAGMN_04755 0.79 +1.4 863,149 + modE NIAGMN_04755 0.79 -0.8 863,178 + modE NIAGMN_04755 0.83 -0.8 863,270 + -0.6 863,417 + -0.1 863,781 + modF NIAGMN_04760 0.27 +0.3 863,921 - modF NIAGMN_04760 0.37 +1.6 863,936 + modF NIAGMN_04760 0.38 +0.2 863,936 + modF NIAGMN_04760 0.38 +0.8 863,937 - modF NIAGMN_04760 0.38 -0.1 863,937 - modF NIAGMN_04760 0.38 +1.2 864,078 - modF NIAGMN_04760 0.47 -1.0 864,078 - modF NIAGMN_04760 0.47 -0.6 864,187 - modF NIAGMN_04760 0.55 +2.8 864,189 - modF NIAGMN_04760 0.55 +0.2 864,206 + modF NIAGMN_04760 0.56 +1.8 864,207 - modF NIAGMN_04760 0.56 +0.8 864,207 - modF NIAGMN_04760 0.56 +1.8 864,210 - modF NIAGMN_04760 0.56 -1.3 864,216 - modF NIAGMN_04760 0.57 -1.4 864,216 - modF NIAGMN_04760 0.57 -0.6 864,283 + modF NIAGMN_04760 0.61 +1.8 864,284 - modF NIAGMN_04760 0.61 +0.2 864,435 - modF NIAGMN_04760 0.72 +0.8 864,438 - modF NIAGMN_04760 0.72 -1.0 864,578 + modF NIAGMN_04760 0.81 +1.8 864,578 + modF NIAGMN_04760 0.81 -1.7 864,579 - modF NIAGMN_04760 0.81 -0.5 864,696 - modF NIAGMN_04760 0.89 -0.6 864,782 + +0.4 864,782 + -2.1 864,828 + +1.2 864,828 + +2.5 864,845 - +0.8 864,850 - +0.8 865,070 + -0.1 865,082 - -0.8 865,093 + -0.8 865,214 + -0.0 865,221 - galT NIAGMN_04765 0.11 -0.2 865,221 - galT NIAGMN_04765 0.11 +1.2 865,232 - galT NIAGMN_04765 0.12 -0.1 865,398 + galT NIAGMN_04765 0.28 +0.2 865,519 - galT NIAGMN_04765 0.40 -0.8 865,558 - galT NIAGMN_04765 0.44 +0.8 865,558 - galT NIAGMN_04765 0.44 +2.8 865,713 - galT NIAGMN_04765 0.59 +1.6 865,719 + galT NIAGMN_04765 0.60 +0.0 865,719 + galT NIAGMN_04765 0.60 -0.5 865,720 - galT NIAGMN_04765 0.60 -1.2 865,809 + galT NIAGMN_04765 0.68 +0.5 865,809 + galT NIAGMN_04765 0.68 +0.4 865,810 - galT NIAGMN_04765 0.69 +0.8 865,820 - galT NIAGMN_04765 0.70 -1.2 865,820 - galT NIAGMN_04765 0.70 -0.8
Or see this region's nucleotide sequence