Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhH and ybhD are separated by 183 nucleotides ybhD and pgl are separated by 40 nucleotides
NIAGMN_04715: ybhH - 4-oxalomesaconate tautomerase, at 855,356 to 856,408
ybhH
NIAGMN_04720: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 856,592 to 857,545
ybhD
NIAGMN_04725: pgl - 6-phosphogluconolactonase, at 857,586 to 858,581
pgl
Position (kb) 856
857
858 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 855.796 kb on - strand, within ybhH at 856.053 kb on - strand, within ybhH at 856.124 kb on - strand, within ybhH at 856.185 kb on + strand, within ybhH at 856.729 kb on + strand, within ybhD at 856.859 kb on + strand, within ybhD at 857.178 kb on + strand, within ybhD at 857.208 kb on + strand, within ybhD at 857.252 kb on + strand, within ybhD at 857.280 kb on + strand, within ybhD at 857.289 kb on + strand, within ybhD at 857.290 kb on - strand, within ybhD at 857.357 kb on - strand, within ybhD at 857.383 kb on + strand, within ybhD at 857.385 kb on + strand, within ybhD at 857.538 kb on + strand at 857.538 kb on + strand at 857.538 kb on + strand at 857.633 kb on - strand at 857.652 kb on + strand at 857.719 kb on + strand, within pgl at 857.723 kb on + strand, within pgl at 857.739 kb on - strand, within pgl at 857.823 kb on - strand, within pgl at 857.853 kb on + strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.873 kb on + strand, within pgl at 857.883 kb on - strand, within pgl at 857.994 kb on + strand, within pgl at 857.995 kb on - strand, within pgl at 858.010 kb on + strand, within pgl at 858.016 kb on + strand, within pgl at 858.017 kb on - strand, within pgl at 858.017 kb on - strand, within pgl at 858.037 kb on - strand, within pgl at 858.041 kb on + strand, within pgl at 858.164 kb on + strand, within pgl at 858.259 kb on - strand, within pgl at 858.280 kb on + strand, within pgl at 858.281 kb on - strand, within pgl at 858.281 kb on - strand, within pgl at 858.281 kb on - strand, within pgl at 858.288 kb on + strand, within pgl at 858.324 kb on - strand, within pgl at 858.324 kb on - strand, within pgl at 858.390 kb on - strand, within pgl at 858.430 kb on + strand, within pgl at 858.430 kb on + strand, within pgl at 858.431 kb on - strand, within pgl at 858.437 kb on - strand, within pgl
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 855,796 - ybhH NIAGMN_04715 0.42 -0.5 856,053 - ybhH NIAGMN_04715 0.66 +2.1 856,124 - ybhH NIAGMN_04715 0.73 +0.6 856,185 + ybhH NIAGMN_04715 0.79 -0.7 856,729 + ybhD NIAGMN_04720 0.14 +0.8 856,859 + ybhD NIAGMN_04720 0.28 -1.0 857,178 + ybhD NIAGMN_04720 0.61 -0.8 857,208 + ybhD NIAGMN_04720 0.65 -0.9 857,252 + ybhD NIAGMN_04720 0.69 -1.0 857,280 + ybhD NIAGMN_04720 0.72 -0.4 857,289 + ybhD NIAGMN_04720 0.73 -0.9 857,290 - ybhD NIAGMN_04720 0.73 +2.8 857,357 - ybhD NIAGMN_04720 0.80 +1.2 857,383 + ybhD NIAGMN_04720 0.83 +0.2 857,385 + ybhD NIAGMN_04720 0.83 -0.6 857,538 + -1.0 857,538 + -0.3 857,538 + -0.7 857,633 - +0.8 857,652 + +1.2 857,719 + pgl NIAGMN_04725 0.13 -0.8 857,723 + pgl NIAGMN_04725 0.14 -2.0 857,739 - pgl NIAGMN_04725 0.15 -1.4 857,823 - pgl NIAGMN_04725 0.24 +0.6 857,853 + pgl NIAGMN_04725 0.27 +0.3 857,854 - pgl NIAGMN_04725 0.27 +0.2 857,854 - pgl NIAGMN_04725 0.27 -0.2 857,854 - pgl NIAGMN_04725 0.27 +2.4 857,854 - pgl NIAGMN_04725 0.27 +0.8 857,873 + pgl NIAGMN_04725 0.29 +0.8 857,883 - pgl NIAGMN_04725 0.30 +1.0 857,994 + pgl NIAGMN_04725 0.41 +1.8 857,995 - pgl NIAGMN_04725 0.41 +0.8 858,010 + pgl NIAGMN_04725 0.43 -1.2 858,016 + pgl NIAGMN_04725 0.43 -0.7 858,017 - pgl NIAGMN_04725 0.43 +1.8 858,017 - pgl NIAGMN_04725 0.43 +0.8 858,037 - pgl NIAGMN_04725 0.45 -1.7 858,041 + pgl NIAGMN_04725 0.46 -0.6 858,164 + pgl NIAGMN_04725 0.58 +0.6 858,259 - pgl NIAGMN_04725 0.68 +2.8 858,280 + pgl NIAGMN_04725 0.70 -0.6 858,281 - pgl NIAGMN_04725 0.70 -2.6 858,281 - pgl NIAGMN_04725 0.70 -0.4 858,281 - pgl NIAGMN_04725 0.70 -0.2 858,288 + pgl NIAGMN_04725 0.70 +1.8 858,324 - pgl NIAGMN_04725 0.74 -0.2 858,324 - pgl NIAGMN_04725 0.74 -1.0 858,390 - pgl NIAGMN_04725 0.81 -1.4 858,430 + pgl NIAGMN_04725 0.85 -0.7 858,430 + pgl NIAGMN_04725 0.85 +1.2 858,431 - pgl NIAGMN_04725 0.85 +0.2 858,437 - pgl NIAGMN_04725 0.85 +0.0
Or see this region's nucleotide sequence