Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhtA and dps are separated by 298 nucleotides dps and glnH are separated by 403 nucleotides
NIAGMN_04245: rhtA - threonine/homoserine exporter RhtA, at 766,637 to 767,524
rhtA
NIAGMN_04250: dps - DNA starvation/stationary phase protection protein Dps, at 767,823 to 768,326
dps
NIAGMN_04255: glnH - glutamine ABC transporter substrate-binding protein GlnH, at 768,730 to 769,476
glnH
Position (kb) 767
768
769 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 766.909 kb on + strand, within rhtA at 766.930 kb on + strand, within rhtA at 767.043 kb on + strand, within rhtA at 767.123 kb on + strand, within rhtA at 767.123 kb on + strand, within rhtA at 767.123 kb on + strand, within rhtA at 767.130 kb on + strand, within rhtA at 767.282 kb on - strand, within rhtA at 767.427 kb on + strand, within rhtA at 767.473 kb on + strand at 767.474 kb on - strand at 767.484 kb on + strand at 767.518 kb on + strand at 767.594 kb on - strand at 767.596 kb on - strand at 767.596 kb on - strand at 767.596 kb on - strand at 767.596 kb on - strand at 767.597 kb on + strand at 767.606 kb on - strand at 767.771 kb on + strand at 767.773 kb on + strand at 767.774 kb on - strand at 767.777 kb on + strand at 767.777 kb on + strand at 767.777 kb on + strand at 767.791 kb on - strand at 767.791 kb on - strand at 767.800 kb on + strand at 767.800 kb on + strand at 767.800 kb on + strand at 767.800 kb on + strand at 767.911 kb on + strand, within dps at 767.942 kb on + strand, within dps at 767.993 kb on + strand, within dps at 768.007 kb on + strand, within dps at 768.007 kb on + strand, within dps at 768.113 kb on + strand, within dps at 768.314 kb on + strand at 768.418 kb on + strand at 768.524 kb on + strand at 768.524 kb on + strand at 768.679 kb on - strand at 768.861 kb on + strand, within glnH at 768.865 kb on + strand, within glnH at 768.865 kb on + strand, within glnH at 769.003 kb on - strand, within glnH at 769.051 kb on + strand, within glnH at 769.222 kb on + strand, within glnH at 769.222 kb on + strand, within glnH at 769.224 kb on + strand, within glnH at 769.224 kb on + strand, within glnH at 769.224 kb on + strand, within glnH at 769.282 kb on + strand, within glnH at 769.282 kb on + strand, within glnH at 769.283 kb on - strand, within glnH
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 766,909 + rhtA NIAGMN_04245 0.31 -1.2 766,930 + rhtA NIAGMN_04245 0.33 +0.8 767,043 + rhtA NIAGMN_04245 0.46 +0.8 767,123 + rhtA NIAGMN_04245 0.55 -0.6 767,123 + rhtA NIAGMN_04245 0.55 +0.6 767,123 + rhtA NIAGMN_04245 0.55 +0.5 767,130 + rhtA NIAGMN_04245 0.56 +0.2 767,282 - rhtA NIAGMN_04245 0.73 +0.5 767,427 + rhtA NIAGMN_04245 0.89 +1.5 767,473 + -2.1 767,474 - -0.4 767,484 + -0.7 767,518 + +0.1 767,594 - +1.0 767,596 - +0.5 767,596 - -1.0 767,596 - +1.5 767,596 - +0.6 767,597 + -0.2 767,606 - +2.1 767,771 + +1.5 767,773 + +0.1 767,774 - +0.4 767,777 + -1.0 767,777 + -0.1 767,777 + -1.2 767,791 - +0.5 767,791 - +1.8 767,800 + -0.7 767,800 + -1.8 767,800 + +0.4 767,800 + +0.5 767,911 + dps NIAGMN_04250 0.17 -0.4 767,942 + dps NIAGMN_04250 0.24 -1.0 767,993 + dps NIAGMN_04250 0.34 -1.2 768,007 + dps NIAGMN_04250 0.37 -0.2 768,007 + dps NIAGMN_04250 0.37 -0.8 768,113 + dps NIAGMN_04250 0.58 -0.6 768,314 + -1.4 768,418 + +0.4 768,524 + -0.8 768,524 + +0.0 768,679 - -0.5 768,861 + glnH NIAGMN_04255 0.18 -0.0 768,865 + glnH NIAGMN_04255 0.18 +0.8 768,865 + glnH NIAGMN_04255 0.18 +0.5 769,003 - glnH NIAGMN_04255 0.37 +0.2 769,051 + glnH NIAGMN_04255 0.43 +1.4 769,222 + glnH NIAGMN_04255 0.66 -0.8 769,222 + glnH NIAGMN_04255 0.66 -0.2 769,224 + glnH NIAGMN_04255 0.66 +1.8 769,224 + glnH NIAGMN_04255 0.66 -0.6 769,224 + glnH NIAGMN_04255 0.66 +0.5 769,282 + glnH NIAGMN_04255 0.74 +2.8 769,282 + glnH NIAGMN_04255 0.74 -1.2 769,283 - glnH NIAGMN_04255 0.74 -1.5
Or see this region's nucleotide sequence