Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04050

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybjL and rcdA are separated by 174 nucleotidesrcdA and ybjJ are separated by 83 nucleotides NIAGMN_04040: ybjL - aspartate:alanine antiporter, at 725,934 to 727,619 ybjL NIAGMN_04050: rcdA - DNA-binding transcriptional regulator RcdA, at 727,794 to 728,330 rcdA NIAGMN_04055: ybjJ - Inner membrane protein YbjJ, at 728,414 to 729,622 ybjJ Position (kb) 727 728 729Strain fitness (log2 ratio) -2 -1 0 1 2 3at 726.882 kb on - strand, within ybjLat 726.926 kb on + strand, within ybjLat 727.255 kb on + strand, within ybjLat 727.255 kb on + strand, within ybjLat 727.289 kb on + strand, within ybjLat 727.289 kb on + strand, within ybjLat 727.419 kb on + strand, within ybjLat 727.419 kb on + strand, within ybjLat 727.419 kb on + strand, within ybjLat 727.423 kb on + strand, within ybjLat 727.548 kb on + strandat 727.548 kb on + strandat 727.549 kb on - strandat 727.600 kb on + strandat 727.688 kb on + strandat 727.793 kb on - strandat 727.793 kb on - strandat 727.796 kb on - strandat 727.796 kb on - strandat 727.848 kb on - strand, within rcdAat 727.884 kb on - strand, within rcdAat 728.054 kb on - strand, within rcdAat 728.189 kb on - strand, within rcdAat 728.291 kb on + strandat 728.435 kb on - strandat 728.435 kb on - strandat 728.525 kb on - strandat 728.644 kb on + strand, within ybjJat 728.691 kb on + strand, within ybjJat 728.691 kb on + strand, within ybjJat 728.694 kb on + strand, within ybjJat 728.694 kb on + strand, within ybjJat 728.694 kb on + strand, within ybjJat 728.694 kb on + strand, within ybjJat 728.695 kb on - strand, within ybjJat 728.946 kb on + strand, within ybjJat 728.959 kb on + strand, within ybjJat 728.959 kb on + strand, within ybjJat 728.959 kb on + strand, within ybjJat 728.961 kb on + strand, within ybjJat 728.961 kb on + strand, within ybjJat 728.961 kb on + strand, within ybjJat 728.961 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.963 kb on + strand, within ybjJat 728.964 kb on - strand, within ybjJat 728.964 kb on - strand, within ybjJat 728.964 kb on - strand, within ybjJat 728.965 kb on + strand, within ybjJat 728.965 kb on + strand, within ybjJat 729.126 kb on + strand, within ybjJat 729.132 kb on + strand, within ybjJat 729.132 kb on + strand, within ybjJat 729.279 kb on + strand, within ybjJ

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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726,882 - ybjL NIAGMN_04040 0.56 -1.4
726,926 + ybjL NIAGMN_04040 0.59 +0.1
727,255 + ybjL NIAGMN_04040 0.78 +1.4
727,255 + ybjL NIAGMN_04040 0.78 -0.2
727,289 + ybjL NIAGMN_04040 0.80 -0.6
727,289 + ybjL NIAGMN_04040 0.80 -0.6
727,419 + ybjL NIAGMN_04040 0.88 +1.0
727,419 + ybjL NIAGMN_04040 0.88 +1.7
727,419 + ybjL NIAGMN_04040 0.88 +1.2
727,423 + ybjL NIAGMN_04040 0.88 +0.1
727,548 + -0.3
727,548 + -1.6
727,549 - +0.1
727,600 + -0.7
727,688 + -1.4
727,793 - +0.9
727,793 - +0.3
727,796 - +0.6
727,796 - +0.7
727,848 - rcdA NIAGMN_04050 0.10 -0.9
727,884 - rcdA NIAGMN_04050 0.17 -2.0
728,054 - rcdA NIAGMN_04050 0.48 -0.4
728,189 - rcdA NIAGMN_04050 0.74 -0.1
728,291 + -1.1
728,435 - +0.1
728,435 - +0.1
728,525 - +0.3
728,644 + ybjJ NIAGMN_04055 0.19 +0.3
728,691 + ybjJ NIAGMN_04055 0.23 +0.1
728,691 + ybjJ NIAGMN_04055 0.23 -0.4
728,694 + ybjJ NIAGMN_04055 0.23 +1.4
728,694 + ybjJ NIAGMN_04055 0.23 -0.1
728,694 + ybjJ NIAGMN_04055 0.23 -0.9
728,694 + ybjJ NIAGMN_04055 0.23 +0.1
728,695 - ybjJ NIAGMN_04055 0.23 -2.0
728,946 + ybjJ NIAGMN_04055 0.44 -1.4
728,959 + ybjJ NIAGMN_04055 0.45 +1.0
728,959 + ybjJ NIAGMN_04055 0.45 -2.0
728,959 + ybjJ NIAGMN_04055 0.45 +1.0
728,961 + ybjJ NIAGMN_04055 0.45 -1.1
728,961 + ybjJ NIAGMN_04055 0.45 +0.7
728,961 + ybjJ NIAGMN_04055 0.45 -0.3
728,961 + ybjJ NIAGMN_04055 0.45 +0.3
728,963 + ybjJ NIAGMN_04055 0.45 +1.0
728,963 + ybjJ NIAGMN_04055 0.45 -0.9
728,963 + ybjJ NIAGMN_04055 0.45 +0.1
728,963 + ybjJ NIAGMN_04055 0.45 +0.5
728,963 + ybjJ NIAGMN_04055 0.45 +1.1
728,963 + ybjJ NIAGMN_04055 0.45 -1.3
728,963 + ybjJ NIAGMN_04055 0.45 -0.9
728,963 + ybjJ NIAGMN_04055 0.45 +0.4
728,963 + ybjJ NIAGMN_04055 0.45 +0.7
728,963 + ybjJ NIAGMN_04055 0.45 -1.7
728,963 + ybjJ NIAGMN_04055 0.45 +0.3
728,963 + ybjJ NIAGMN_04055 0.45 -0.3
728,963 + ybjJ NIAGMN_04055 0.45 +3.3
728,964 - ybjJ NIAGMN_04055 0.45 +0.7
728,964 - ybjJ NIAGMN_04055 0.45 +0.5
728,964 - ybjJ NIAGMN_04055 0.45 -2.0
728,965 + ybjJ NIAGMN_04055 0.46 -1.6
728,965 + ybjJ NIAGMN_04055 0.46 -1.7
729,126 + ybjJ NIAGMN_04055 0.59 -1.4
729,132 + ybjJ NIAGMN_04055 0.59 +1.4
729,132 + ybjJ NIAGMN_04055 0.59 -0.5
729,279 + ybjJ NIAGMN_04055 0.72 +0.7

Or see this region's nucleotide sequence