Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03430

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_03410 and NIAGMN_03415 are separated by 53 nucleotidesNIAGMN_03415 and NIAGMN_03420 overlap by 119 nucleotidesNIAGMN_03420 and NIAGMN_03425 are separated by 112 nucleotidesNIAGMN_03425 and NIAGMN_03430 are separated by 47 nucleotidesNIAGMN_03430 and spo0J are separated by 368 nucleotides NIAGMN_03410: NIAGMN_03410 - putative transposase of insertion sequence IS682, at 612,441 to 612,866 _03410 NIAGMN_03415: NIAGMN_03415 - Integrase catalytic domain-containing protein, at 612,920 to 613,168 _03415 NIAGMN_03420: NIAGMN_03420 - BfpM-like protein, at 613,050 to 613,550 _03420 NIAGMN_03425: NIAGMN_03425 - hypothetical protein, at 613,663 to 613,818 _03425 NIAGMN_03430: NIAGMN_03430 - hypothetical protein, at 613,866 to 614,510 _03430 NIAGMN_03435: spo0J - transcriptional regulator, at 614,879 to 615,517 spo0J NIAGMN_03440: ybdN - phosphoadenosine phosphosulfate reductase, at 615,502 to 616,734 ybdN Position (kb) 613 614 615Strain fitness (log2 ratio) -2 -1 0 1at 612.870 kb on + strandat 612.870 kb on + strandat 612.871 kb on - strandat 612.929 kb on + strandat 612.929 kb on + strandat 613.551 kb on - strandat 613.657 kb on - strandat 613.665 kb on - strandat 613.841 kb on - strandat 613.881 kb on - strandat 613.903 kb on - strandat 614.394 kb on + strand, within NIAGMN_03430at 614.429 kb on - strand, within NIAGMN_03430at 614.484 kb on - strandat 614.511 kb on + strandat 614.546 kb on - strandat 614.846 kb on - strandat 614.859 kb on - strandat 614.862 kb on - strandat 614.863 kb on + strandat 614.864 kb on - strandat 614.864 kb on - strandat 614.864 kb on - strandat 615.098 kb on - strand, within spo0Jat 615.098 kb on - strand, within spo0Jat 615.220 kb on - strand, within spo0Jat 615.220 kb on - strand, within spo0Jat 615.325 kb on - strand, within spo0Jat 615.325 kb on - strand, within spo0Jat 615.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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612,870 + +0.5
612,870 + -0.6
612,871 - +0.2
612,929 + +0.7
612,929 + -2.0
613,551 - +1.7
613,657 - +1.7
613,665 - +0.7
613,841 - -0.6
613,881 - -0.1
613,903 - +0.7
614,394 + NIAGMN_03430 0.82 -1.1
614,429 - NIAGMN_03430 0.87 +0.1
614,484 - -0.4
614,511 + +0.7
614,546 - +1.1
614,846 - +1.0
614,859 - +1.7
614,862 - +1.1
614,863 + +0.3
614,864 - -0.7
614,864 - +0.7
614,864 - +0.7
615,098 - spo0J NIAGMN_03435 0.34 +0.9
615,098 - spo0J NIAGMN_03435 0.34 +0.1
615,220 - spo0J NIAGMN_03435 0.53 -0.3
615,220 - spo0J NIAGMN_03435 0.53 -1.8
615,325 - spo0J NIAGMN_03435 0.70 +0.1
615,325 - spo0J NIAGMN_03435 0.70 -0.6
615,469 - +0.2

Or see this region's nucleotide sequence