Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gloC and ycbK are separated by 26 nucleotides ycbK and ldtD are separated by 180 nucleotides ldtD and mukB are separated by 260 nucleotides
NIAGMN_03110: gloC - hydroxyacylglutathione hydrolase GloC, at 540,853 to 541,500
gloC
NIAGMN_03115: ycbK - Uncharacterized protein YcbK, at 541,527 to 542,075
ycbK
NIAGMN_03120: ldtD - L,D-transpeptidase, at 542,256 to 544,103
ldtD
NIAGMN_03125: mukB - chromosome partition protein MukB, at 544,364 to 548,824
mukB
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -1
0
1
2 at 541.494 kb on - strand at 541.500 kb on + strand at 541.526 kb on - strand at 541.526 kb on - strand at 541.529 kb on - strand at 541.529 kb on - strand at 541.557 kb on - strand at 541.557 kb on - strand at 541.569 kb on - strand at 541.569 kb on - strand at 541.569 kb on - strand at 541.580 kb on - strand at 541.588 kb on - strand, within ycbK at 541.604 kb on + strand, within ycbK at 541.605 kb on - strand, within ycbK at 541.609 kb on - strand, within ycbK at 541.609 kb on - strand, within ycbK at 541.813 kb on - strand, within ycbK at 541.895 kb on - strand, within ycbK at 542.088 kb on + strand at 542.108 kb on + strand at 542.109 kb on - strand at 542.110 kb on + strand at 542.111 kb on - strand at 542.111 kb on - strand at 542.249 kb on - strand at 542.266 kb on - strand at 542.266 kb on - strand at 542.284 kb on - strand at 542.318 kb on - strand at 542.378 kb on - strand at 542.487 kb on - strand, within ldtD at 542.747 kb on + strand, within ldtD at 542.748 kb on - strand, within ldtD at 542.842 kb on - strand, within ldtD at 543.155 kb on - strand, within ldtD at 543.186 kb on - strand, within ldtD at 543.286 kb on - strand, within ldtD at 543.576 kb on - strand, within ldtD at 543.576 kb on - strand, within ldtD at 543.576 kb on - strand, within ldtD at 543.576 kb on - strand, within ldtD at 543.580 kb on - strand, within ldtD at 543.708 kb on - strand, within ldtD at 543.811 kb on + strand, within ldtD at 543.847 kb on + strand, within ldtD at 544.095 kb on - strand at 544.126 kb on + strand at 544.166 kb on - strand at 544.228 kb on + strand at 544.230 kb on + strand at 544.231 kb on - strand at 544.231 kb on - strand at 544.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 541,494 - +0.1 541,500 + -1.2 541,526 - -0.5 541,526 - -0.4 541,529 - +1.7 541,529 - +0.1 541,557 - +2.7 541,557 - +1.7 541,569 - +1.1 541,569 - +0.2 541,569 - -0.3 541,580 - +0.3 541,588 - ycbK NIAGMN_03115 0.11 +1.7 541,604 + ycbK NIAGMN_03115 0.14 +1.7 541,605 - ycbK NIAGMN_03115 0.14 -0.5 541,609 - ycbK NIAGMN_03115 0.15 -0.5 541,609 - ycbK NIAGMN_03115 0.15 -0.2 541,813 - ycbK NIAGMN_03115 0.52 +0.1 541,895 - ycbK NIAGMN_03115 0.67 +1.7 542,088 + +0.3 542,108 + +0.7 542,109 - +0.1 542,110 + +0.3 542,111 - +0.7 542,111 - +0.1 542,249 - +0.7 542,266 - +0.4 542,266 - -0.3 542,284 - +0.4 542,318 - -0.6 542,378 - +0.3 542,487 - ldtD NIAGMN_03120 0.12 -1.3 542,747 + ldtD NIAGMN_03120 0.27 +0.3 542,748 - ldtD NIAGMN_03120 0.27 +0.7 542,842 - ldtD NIAGMN_03120 0.32 -0.3 543,155 - ldtD NIAGMN_03120 0.49 +0.1 543,186 - ldtD NIAGMN_03120 0.50 +1.7 543,286 - ldtD NIAGMN_03120 0.56 -0.7 543,576 - ldtD NIAGMN_03120 0.71 +0.4 543,576 - ldtD NIAGMN_03120 0.71 +0.5 543,576 - ldtD NIAGMN_03120 0.71 +0.7 543,576 - ldtD NIAGMN_03120 0.71 +0.1 543,580 - ldtD NIAGMN_03120 0.72 +0.5 543,708 - ldtD NIAGMN_03120 0.79 -0.3 543,811 + ldtD NIAGMN_03120 0.84 +0.7 543,847 + ldtD NIAGMN_03120 0.86 +1.0 544,095 - +0.7 544,126 + -0.2 544,166 - -0.1 544,228 + -0.5 544,230 + -0.3 544,231 - +0.2 544,231 - -0.3 544,360 - +0.1
Or see this region's nucleotide sequence