Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01385

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaK and yeaL are separated by 274 nucleotidesyeaL and nimR overlap by 44 nucleotidesnimR and nimT are separated by 99 nucleotides NIAGMN_01375: yeaK - mischarged aminoacyl-tRNA deacylase, at 250,761 to 251,264 yeaK NIAGMN_01380: yeaL - UPF0756 membrane protein CKO_01811, at 251,539 to 251,985 yeaL NIAGMN_01385: nimR - DNA-binding transcriptional regulator NimR, at 251,942 to 252,760 nimR NIAGMN_01390: nimT - 2-nitroimidazole transporter, at 252,860 to 254,041 nimT Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2at 251.017 kb on + strand, within yeaKat 251.017 kb on + strand, within yeaKat 251.027 kb on - strand, within yeaKat 251.266 kb on + strandat 251.387 kb on + strandat 251.499 kb on - strandat 251.691 kb on - strand, within yeaLat 251.984 kb on - strandat 252.038 kb on - strand, within nimRat 252.038 kb on - strand, within nimRat 252.041 kb on - strand, within nimRat 252.073 kb on + strand, within nimRat 252.517 kb on + strand, within nimRat 252.517 kb on + strand, within nimRat 252.517 kb on + strand, within nimRat 252.659 kb on + strand, within nimRat 252.671 kb on + strand, within nimRat 252.860 kb on - strandat 252.931 kb on + strandat 253.163 kb on + strand, within nimTat 253.271 kb on - strand, within nimTat 253.464 kb on + strand, within nimT

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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251,017 + yeaK NIAGMN_01375 0.51 -0.0
251,017 + yeaK NIAGMN_01375 0.51 -0.2
251,027 - yeaK NIAGMN_01375 0.53 -0.0
251,266 + -0.6
251,387 + +0.1
251,499 - -0.2
251,691 - yeaL NIAGMN_01380 0.34 +1.0
251,984 - +0.1
252,038 - nimR NIAGMN_01385 0.12 -0.8
252,038 - nimR NIAGMN_01385 0.12 +1.0
252,041 - nimR NIAGMN_01385 0.12 -0.1
252,073 + nimR NIAGMN_01385 0.16 -0.4
252,517 + nimR NIAGMN_01385 0.70 +0.3
252,517 + nimR NIAGMN_01385 0.70 -0.4
252,517 + nimR NIAGMN_01385 0.70 +0.3
252,659 + nimR NIAGMN_01385 0.88 -0.7
252,671 + nimR NIAGMN_01385 0.89 -1.4
252,860 - +0.6
252,931 + -0.1
253,163 + nimT NIAGMN_01390 0.26 +0.6
253,271 - nimT NIAGMN_01390 0.35 +2.6
253,464 + nimT NIAGMN_01390 0.51 -2.5

Or see this region's nucleotide sequence