Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01185

Experiment: TP9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydjY and ydjZ are separated by 14 nucleotidesydjZ and ynjA overlap by 1 nucleotidesynjA and ynjB are separated by 9 nucleotides NIAGMN_01175: ydjY - Uncharacterized protein YdjY, at 209,200 to 209,877 ydjY NIAGMN_01180: ydjZ - TVP38/TMEM64 family inner membrane protein YdjZ, at 209,892 to 210,599 ydjZ NIAGMN_01185: ynjA - Uncharacterized protein YnjA, at 210,599 to 211,147 ynjA NIAGMN_01190: ynjB - ABC transporter substrate-binding protein, at 211,157 to 212,323 ynjB Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1at 209.621 kb on - strand, within ydjYat 209.733 kb on + strand, within ydjYat 209.767 kb on + strand, within ydjYat 209.768 kb on - strand, within ydjYat 209.773 kb on + strand, within ydjYat 209.773 kb on + strand, within ydjYat 209.876 kb on - strandat 209.923 kb on - strandat 209.926 kb on - strandat 209.931 kb on - strandat 210.046 kb on + strand, within ydjZat 210.047 kb on - strand, within ydjZat 210.385 kb on - strand, within ydjZat 210.459 kb on - strand, within ydjZat 210.681 kb on + strand, within ynjAat 211.420 kb on + strand, within ynjBat 211.866 kb on - strand, within ynjBat 212.100 kb on + strand, within ynjB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP9
remove
209,621 - ydjY NIAGMN_01175 0.62 -1.0
209,733 + ydjY NIAGMN_01175 0.79 +1.2
209,767 + ydjY NIAGMN_01175 0.84 -0.4
209,768 - ydjY NIAGMN_01175 0.84 +0.4
209,773 + ydjY NIAGMN_01175 0.85 -0.7
209,773 + ydjY NIAGMN_01175 0.85 -0.7
209,876 - -2.0
209,923 - +0.7
209,926 - +1.3
209,931 - -0.1
210,046 + ydjZ NIAGMN_01180 0.22 -0.6
210,047 - ydjZ NIAGMN_01180 0.22 +0.3
210,385 - ydjZ NIAGMN_01180 0.70 +0.0
210,459 - ydjZ NIAGMN_01180 0.80 +0.6
210,681 + ynjA NIAGMN_01185 0.15 -0.4
211,420 + ynjB NIAGMN_01190 0.23 +1.0
211,866 - ynjB NIAGMN_01190 0.61 +1.4
212,100 + ynjB NIAGMN_01190 0.81 +0.7

Or see this region's nucleotide sequence