Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01060

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthxpB and ybcI are separated by 162 nucleotidesybcI and tcyP are separated by 132 nucleotidestcyP and ydjO are separated by 50 nucleotides NIAGMN_01050: hxpB - hexitol phosphatase HxpB, at 184,665 to 185,333 hxpB NIAGMN_01055: ybcI - metal-dependent hydrolase, at 185,496 to 186,086 ybcI NIAGMN_01060: tcyP - cystine/sulfocysteine:cation symporter, at 186,219 to 187,610 tcyP NIAGMN_01065: ydjO - Uncharacterized protein YdjO, at 187,661 to 188,416 ydjO Position (kb) 186 187 188Strain fitness (log2 ratio) -1 0 1 2at 185.424 kb on - strandat 185.467 kb on + strandat 185.467 kb on + strandat 185.482 kb on + strandat 185.594 kb on + strand, within ybcIat 185.804 kb on - strand, within ybcIat 185.836 kb on + strand, within ybcIat 185.959 kb on + strand, within ybcIat 185.960 kb on - strand, within ybcIat 186.172 kb on + strandat 186.197 kb on + strandat 186.290 kb on + strandat 186.369 kb on + strand, within tcyPat 186.369 kb on + strand, within tcyPat 186.388 kb on + strand, within tcyPat 186.388 kb on + strand, within tcyPat 186.403 kb on + strand, within tcyPat 186.674 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.679 kb on - strand, within tcyPat 186.814 kb on + strand, within tcyPat 186.814 kb on + strand, within tcyPat 186.814 kb on + strand, within tcyPat 186.866 kb on - strand, within tcyPat 187.020 kb on + strand, within tcyPat 187.037 kb on + strand, within tcyPat 187.092 kb on + strand, within tcyPat 187.100 kb on + strand, within tcyPat 187.349 kb on + strand, within tcyPat 187.361 kb on + strand, within tcyPat 187.615 kb on + strandat 187.663 kb on - strandat 187.697 kb on - strandat 187.739 kb on - strand, within ydjOat 188.176 kb on - strand, within ydjO

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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185,424 - +0.4
185,467 + +0.4
185,467 + +1.7
185,482 + +1.6
185,594 + ybcI NIAGMN_01055 0.17 -1.0
185,804 - ybcI NIAGMN_01055 0.52 -1.6
185,836 + ybcI NIAGMN_01055 0.58 +1.6
185,959 + ybcI NIAGMN_01055 0.78 +0.4
185,960 - ybcI NIAGMN_01055 0.79 +0.3
186,172 + +0.8
186,197 + +1.0
186,290 + -0.0
186,369 + tcyP NIAGMN_01060 0.11 +0.5
186,369 + tcyP NIAGMN_01060 0.11 +1.0
186,388 + tcyP NIAGMN_01060 0.12 +1.2
186,388 + tcyP NIAGMN_01060 0.12 +0.6
186,403 + tcyP NIAGMN_01060 0.13 -0.1
186,674 + tcyP NIAGMN_01060 0.33 -1.7
186,678 + tcyP NIAGMN_01060 0.33 -1.0
186,678 + tcyP NIAGMN_01060 0.33 -1.6
186,678 + tcyP NIAGMN_01060 0.33 +0.2
186,678 + tcyP NIAGMN_01060 0.33 +2.1
186,678 + tcyP NIAGMN_01060 0.33 -0.0
186,679 - tcyP NIAGMN_01060 0.33 -1.4
186,814 + tcyP NIAGMN_01060 0.43 -0.1
186,814 + tcyP NIAGMN_01060 0.43 -0.3
186,814 + tcyP NIAGMN_01060 0.43 +1.3
186,866 - tcyP NIAGMN_01060 0.46 -0.0
187,020 + tcyP NIAGMN_01060 0.58 -0.7
187,037 + tcyP NIAGMN_01060 0.59 +0.4
187,092 + tcyP NIAGMN_01060 0.63 +0.4
187,100 + tcyP NIAGMN_01060 0.63 -0.6
187,349 + tcyP NIAGMN_01060 0.81 -0.7
187,361 + tcyP NIAGMN_01060 0.82 +1.6
187,615 + +0.6
187,663 - -1.6
187,697 - -1.3
187,739 - ydjO NIAGMN_01065 0.10 +0.7
188,176 - ydjO NIAGMN_01065 0.68 -0.0

Or see this region's nucleotide sequence