Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_00635 and rnt are separated by 102 nucleotides rnt and lhr are separated by 92 nucleotides lhr and grxD are separated by 50 nucleotides grxD and mepH are separated by 334 nucleotides
NIAGMN_00635: NIAGMN_00635 - Lactoylglutathione lyase, at 103,134 to 103,541
_00635
NIAGMN_00640: rnt - ribonuclease T, at 103,644 to 104,291
rnt
NIAGMN_00645: lhr - ATP-dependent helicase, at 104,384 to 109,000
lhr
NIAGMN_00650: grxD - monothiol glutaredoxin 4, at 109,051 to 109,398
grxD
NIAGMN_00655: mepH - peptidoglycan DD-endopeptidase MepH, at 109,733 to 110,548
mepH
Position (kb) 104
105
106
107
108
109
110 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 104.332 kb on - strand at 104.626 kb on + strand at 105.318 kb on + strand, within lhr at 105.643 kb on - strand, within lhr at 105.712 kb on - strand, within lhr at 105.712 kb on - strand, within lhr at 105.719 kb on - strand, within lhr at 105.898 kb on + strand, within lhr at 106.046 kb on + strand, within lhr at 106.122 kb on - strand, within lhr at 106.624 kb on + strand, within lhr at 107.083 kb on - strand, within lhr at 107.469 kb on + strand, within lhr at 107.929 kb on + strand, within lhr at 108.206 kb on - strand, within lhr at 108.943 kb on + strand at 109.080 kb on - strand at 109.080 kb on - strand at 109.128 kb on - strand, within grxD at 109.201 kb on - strand, within grxD at 109.201 kb on - strand, within grxD at 109.201 kb on - strand, within grxD at 109.201 kb on - strand, within grxD at 109.206 kb on - strand, within grxD at 109.253 kb on + strand, within grxD at 109.423 kb on - strand at 109.498 kb on - strand at 109.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 104,332 - -1.2 104,626 + -0.6 105,318 + lhr NIAGMN_00645 0.20 +0.2 105,643 - lhr NIAGMN_00645 0.27 -1.4 105,712 - lhr NIAGMN_00645 0.29 +2.0 105,712 - lhr NIAGMN_00645 0.29 +0.6 105,719 - lhr NIAGMN_00645 0.29 +1.0 105,898 + lhr NIAGMN_00645 0.33 +0.4 106,046 + lhr NIAGMN_00645 0.36 +3.2 106,122 - lhr NIAGMN_00645 0.38 -1.5 106,624 + lhr NIAGMN_00645 0.49 -1.6 107,083 - lhr NIAGMN_00645 0.58 -0.1 107,469 + lhr NIAGMN_00645 0.67 +0.8 107,929 + lhr NIAGMN_00645 0.77 -0.5 108,206 - lhr NIAGMN_00645 0.83 +0.2 108,943 + +0.6 109,080 - -0.4 109,080 - -0.0 109,128 - grxD NIAGMN_00650 0.22 +0.6 109,201 - grxD NIAGMN_00650 0.43 -2.7 109,201 - grxD NIAGMN_00650 0.43 -1.9 109,201 - grxD NIAGMN_00650 0.43 -0.4 109,201 - grxD NIAGMN_00650 0.43 -0.0 109,206 - grxD NIAGMN_00650 0.45 +0.1 109,253 + grxD NIAGMN_00650 0.58 +1.6 109,423 - +0.3 109,498 - +1.6 109,668 - -2.0
Or see this region's nucleotide sequence