Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00535

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsxD and rsxG are separated by 3 nucleotidesrsxG and rsxE are separated by 3 nucleotidesrsxE and nth overlap by 1 nucleotidesnth and NIAGMN_00545 are separated by 127 nucleotides NIAGMN_00525: rsxD - electron transport complex subunit RsxD, at 84,440 to 85,498 rsxD NIAGMN_00530: rsxG - electron transport complex subunit RsxG, at 85,502 to 86,122 rsxG NIAGMN_00535: rsxE - electron transport complex subunit RsxE, at 86,126 to 86,821 rsxE NIAGMN_00540: nth - endonuclease III, at 86,821 to 87,456 nth NIAGMN_00545: NIAGMN_00545 - hypothetical protein, at 87,584 to 87,784 _00545 Position (kb) 86 87Strain fitness (log2 ratio) -1 0 1 2 3at 85.168 kb on + strand, within rsxDat 85.365 kb on + strand, within rsxDat 85.497 kb on - strandat 85.664 kb on + strand, within rsxGat 85.666 kb on + strand, within rsxGat 85.666 kb on + strand, within rsxGat 85.713 kb on + strand, within rsxGat 85.717 kb on + strand, within rsxGat 85.800 kb on - strand, within rsxGat 86.052 kb on + strand, within rsxGat 86.339 kb on + strand, within rsxEat 86.394 kb on - strand, within rsxEat 86.408 kb on + strand, within rsxEat 86.409 kb on - strand, within rsxEat 86.447 kb on - strand, within rsxEat 86.619 kb on + strand, within rsxEat 86.619 kb on + strand, within rsxEat 86.623 kb on + strand, within rsxEat 87.333 kb on + strand, within nthat 87.375 kb on + strand, within nthat 87.746 kb on - strand, within NIAGMN_00545

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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85,168 + rsxD NIAGMN_00525 0.69 -0.4
85,365 + rsxD NIAGMN_00525 0.87 -1.6
85,497 - +0.6
85,664 + rsxG NIAGMN_00530 0.26 -1.2
85,666 + rsxG NIAGMN_00530 0.26 -0.0
85,666 + rsxG NIAGMN_00530 0.26 +0.4
85,713 + rsxG NIAGMN_00530 0.34 +1.6
85,717 + rsxG NIAGMN_00530 0.35 +0.6
85,800 - rsxG NIAGMN_00530 0.48 -0.7
86,052 + rsxG NIAGMN_00530 0.89 -0.2
86,339 + rsxE NIAGMN_00535 0.31 +3.4
86,394 - rsxE NIAGMN_00535 0.39 +0.6
86,408 + rsxE NIAGMN_00535 0.41 +0.6
86,409 - rsxE NIAGMN_00535 0.41 -0.0
86,447 - rsxE NIAGMN_00535 0.46 +1.6
86,619 + rsxE NIAGMN_00535 0.71 +0.6
86,619 + rsxE NIAGMN_00535 0.71 +0.6
86,623 + rsxE NIAGMN_00535 0.71 +0.6
87,333 + nth NIAGMN_00540 0.81 +0.6
87,375 + nth NIAGMN_00540 0.87 +1.6
87,746 - NIAGMN_00545 0.81 -0.0

Or see this region's nucleotide sequence