Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00480

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthdhA and malI are separated by 111 nucleotidesmalI and NIAGMN_00485 are separated by 174 nucleotides NIAGMN_00475: hdhA - 7-alpha-hydroxysteroid dehydrogenase, at 75,180 to 75,947 hdhA NIAGMN_00480: malI - mal regulon transcriptional regulator MalI, at 76,059 to 77,087 malI NIAGMN_00485: NIAGMN_00485 - hypothetical protein, at 77,262 to 78,434 _00485 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 75.153 kb on - strandat 75.678 kb on - strand, within hdhAat 75.678 kb on - strand, within hdhAat 75.696 kb on - strand, within hdhAat 75.949 kb on + strandat 76.007 kb on - strandat 76.194 kb on + strand, within malIat 76.197 kb on - strand, within malIat 76.624 kb on + strand, within malIat 77.363 kb on + strandat 77.378 kb on + strandat 77.660 kb on + strand, within NIAGMN_00485

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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75,153 - +0.8
75,678 - hdhA NIAGMN_00475 0.65 +1.6
75,678 - hdhA NIAGMN_00475 0.65 -0.2
75,696 - hdhA NIAGMN_00475 0.67 +0.3
75,949 + -0.7
76,007 - -0.0
76,194 + malI NIAGMN_00480 0.13 -0.0
76,197 - malI NIAGMN_00480 0.13 -0.4
76,624 + malI NIAGMN_00480 0.55 -1.9
77,363 + +2.6
77,378 + +0.8
77,660 + NIAGMN_00485 0.34 +0.3

Or see this region's nucleotide sequence