Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00295

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspeG and ynfC are separated by 2 nucleotidesynfC and NIAGMN_00295 are separated by 71 nucleotidesNIAGMN_00295 and ynfE are separated by 198 nucleotides NIAGMN_00285: speG - spermidine N1-acetyltransferase, at 34,264 to 34,824 speG NIAGMN_00290: ynfC - YnfC family lipoprotein, at 34,827 to 35,573 ynfC NIAGMN_00295: NIAGMN_00295 - DUF1161 domain-containing protein, at 35,645 to 35,950 _00295 NIAGMN_00300: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 36,149 to 38,575 ynfE Position (kb) 35 36Strain fitness (log2 ratio) -1 0 1at 35.380 kb on - strand, within ynfCat 35.951 kb on + strandat 35.952 kb on - strandat 36.020 kb on + strandat 36.021 kb on - strandat 36.352 kb on - strandat 36.364 kb on + strandat 36.615 kb on - strand, within ynfEat 36.770 kb on + strand, within ynfEat 36.778 kb on + strand, within ynfE

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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35,380 - ynfC NIAGMN_00290 0.74 +1.6
35,951 + +1.2
35,952 - -0.6
36,020 + -0.3
36,021 - +1.6
36,352 - -0.4
36,364 + +0.5
36,615 - ynfE NIAGMN_00300 0.19 -0.4
36,770 + ynfE NIAGMN_00300 0.26 -0.6
36,778 + ynfE NIAGMN_00300 0.26 +1.4

Or see this region's nucleotide sequence