Experiment: TSB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02338 and MPMX26_02339 overlap by 20 nucleotides MPMX26_02339 and MPMX26_02340 are separated by 12 nucleotides MPMX26_02340 and MPMX26_02341 are separated by 54 nucleotides MPMX26_02341 and MPMX26_02342 are separated by 321 nucleotides
MPMX26_02338: MPMX26_02338 - hypothetical protein, at 2,412,648 to 2,415,128
_02338
MPMX26_02339: MPMX26_02339 - ABC transporter ATP-binding protein YtrE, at 2,415,109 to 2,415,855
_02339
MPMX26_02340: MPMX26_02340 - Esterase TesA, at 2,415,868 to 2,416,497
_02340
MPMX26_02341: MPMX26_02341 - Carbonic anhydrase, at 2,416,552 to 2,417,166
_02341
MPMX26_02342: MPMX26_02342 - Lipase 1, at 2,417,488 to 2,418,519
_02342
Position (kb)
2415
2416
2417 Strain fitness (log2 ratio)
-1
0
1 at 2415.190 kb on - strand, within MPMX26_02339 at 2415.190 kb on - strand, within MPMX26_02339 at 2415.427 kb on - strand, within MPMX26_02339 at 2415.438 kb on - strand, within MPMX26_02339 at 2415.646 kb on - strand, within MPMX26_02339 at 2415.646 kb on - strand, within MPMX26_02339 at 2415.657 kb on - strand, within MPMX26_02339 at 2415.712 kb on - strand, within MPMX26_02339 at 2415.921 kb on + strand at 2416.042 kb on + strand, within MPMX26_02340 at 2416.098 kb on + strand, within MPMX26_02340 at 2416.098 kb on + strand, within MPMX26_02340 at 2416.170 kb on + strand, within MPMX26_02340 at 2416.201 kb on + strand, within MPMX26_02340 at 2416.312 kb on + strand, within MPMX26_02340 at 2416.405 kb on + strand, within MPMX26_02340 at 2416.431 kb on + strand, within MPMX26_02340 at 2416.444 kb on + strand at 2416.444 kb on + strand at 2416.461 kb on + strand at 2416.708 kb on - strand, within MPMX26_02341 at 2416.921 kb on - strand, within MPMX26_02341
Per-strain Table
Position Strand Gene LocusTag Fraction TSB remove 2,415,190 - MPMX26_02339 0.11 +0.2 2,415,190 - MPMX26_02339 0.11 +1.5 2,415,427 - MPMX26_02339 0.43 -0.9 2,415,438 - MPMX26_02339 0.44 +0.1 2,415,646 - MPMX26_02339 0.72 -0.8 2,415,646 - MPMX26_02339 0.72 +1.4 2,415,657 - MPMX26_02339 0.73 -0.0 2,415,712 - MPMX26_02339 0.81 -0.1 2,415,921 + -0.9 2,416,042 + MPMX26_02340 0.28 +0.9 2,416,098 + MPMX26_02340 0.37 -0.0 2,416,098 + MPMX26_02340 0.37 -0.6 2,416,170 + MPMX26_02340 0.48 -0.3 2,416,201 + MPMX26_02340 0.53 -0.1 2,416,312 + MPMX26_02340 0.70 -0.1 2,416,405 + MPMX26_02340 0.85 +0.5 2,416,431 + MPMX26_02340 0.89 +0.3 2,416,444 + -0.4 2,416,444 + -0.3 2,416,461 + +0.5 2,416,708 - MPMX26_02341 0.25 +0.6 2,416,921 - MPMX26_02341 0.60 -0.9
Or see this region's nucleotide sequence