Experiment: TSB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02309 and MPMX26_02310 are separated by 60 nucleotides MPMX26_02310 and MPMX26_02311 are separated by 238 nucleotides MPMX26_02311 and MPMX26_02312 are separated by 2 nucleotides MPMX26_02312 and MPMX26_02313 are separated by 19 nucleotides
MPMX26_02309: MPMX26_02309 - hypothetical protein, at 2,379,526 to 2,380,839
_02309
MPMX26_02310: MPMX26_02310 - hypothetical protein, at 2,380,900 to 2,381,412
_02310
MPMX26_02311: MPMX26_02311 - Peptidoglycan D,D-transpeptidase MrdA, at 2,381,651 to 2,383,663
_02311
MPMX26_02312: MPMX26_02312 - Ribosomal RNA small subunit methyltransferase D, at 2,383,666 to 2,384,217
_02312
MPMX26_02313: MPMX26_02313 - hypothetical protein, at 2,384,237 to 2,384,473
_02313
Position (kb)
2381
2382
2383
2384 Strain fitness (log2 ratio)
-2
-1
0
1 at 2380.878 kb on - strand at 2381.335 kb on - strand, within MPMX26_02310 at 2381.987 kb on + strand, within MPMX26_02311 at 2382.287 kb on + strand, within MPMX26_02311 at 2382.469 kb on + strand, within MPMX26_02311 at 2382.553 kb on + strand, within MPMX26_02311 at 2382.553 kb on + strand, within MPMX26_02311 at 2382.563 kb on + strand, within MPMX26_02311 at 2382.577 kb on + strand, within MPMX26_02311 at 2382.577 kb on + strand, within MPMX26_02311 at 2382.587 kb on + strand, within MPMX26_02311 at 2382.610 kb on + strand, within MPMX26_02311 at 2382.733 kb on + strand, within MPMX26_02311 at 2382.823 kb on + strand, within MPMX26_02311 at 2382.896 kb on + strand, within MPMX26_02311 at 2382.896 kb on + strand, within MPMX26_02311 at 2382.896 kb on + strand, within MPMX26_02311 at 2382.917 kb on + strand, within MPMX26_02311 at 2382.925 kb on + strand, within MPMX26_02311 at 2382.925 kb on + strand, within MPMX26_02311 at 2382.925 kb on + strand, within MPMX26_02311 at 2382.925 kb on + strand, within MPMX26_02311 at 2382.925 kb on + strand, within MPMX26_02311 at 2382.925 kb on + strand, within MPMX26_02311 at 2382.925 kb on + strand, within MPMX26_02311 at 2382.951 kb on + strand, within MPMX26_02311 at 2382.967 kb on + strand, within MPMX26_02311 at 2383.085 kb on + strand, within MPMX26_02311 at 2383.091 kb on + strand, within MPMX26_02311 at 2383.150 kb on + strand, within MPMX26_02311 at 2383.163 kb on + strand, within MPMX26_02311 at 2383.184 kb on + strand, within MPMX26_02311 at 2383.238 kb on + strand, within MPMX26_02311 at 2383.279 kb on + strand, within MPMX26_02311 at 2383.279 kb on + strand, within MPMX26_02311 at 2383.279 kb on + strand, within MPMX26_02311 at 2383.436 kb on + strand, within MPMX26_02311 at 2383.505 kb on + strand at 2383.505 kb on + strand at 2383.510 kb on + strand at 2383.510 kb on + strand at 2383.510 kb on + strand at 2383.520 kb on + strand at 2383.520 kb on + strand at 2383.520 kb on + strand at 2383.550 kb on + strand at 2383.550 kb on + strand at 2383.555 kb on + strand at 2383.555 kb on + strand at 2383.555 kb on + strand at 2383.555 kb on + strand at 2383.570 kb on + strand at 2383.582 kb on + strand at 2383.598 kb on + strand at 2383.599 kb on + strand at 2383.599 kb on + strand at 2383.616 kb on + strand at 2383.729 kb on + strand, within MPMX26_02312 at 2383.729 kb on + strand, within MPMX26_02312 at 2383.747 kb on + strand, within MPMX26_02312 at 2383.813 kb on + strand, within MPMX26_02312 at 2383.878 kb on + strand, within MPMX26_02312 at 2383.890 kb on + strand, within MPMX26_02312 at 2383.890 kb on + strand, within MPMX26_02312 at 2383.890 kb on + strand, within MPMX26_02312 at 2383.890 kb on + strand, within MPMX26_02312 at 2383.890 kb on + strand, within MPMX26_02312 at 2383.900 kb on + strand, within MPMX26_02312 at 2383.900 kb on + strand, within MPMX26_02312 at 2383.900 kb on + strand, within MPMX26_02312 at 2383.900 kb on + strand, within MPMX26_02312 at 2383.900 kb on + strand, within MPMX26_02312 at 2383.900 kb on + strand, within MPMX26_02312 at 2383.905 kb on + strand, within MPMX26_02312 at 2383.905 kb on + strand, within MPMX26_02312 at 2383.905 kb on + strand, within MPMX26_02312 at 2383.932 kb on + strand, within MPMX26_02312 at 2383.956 kb on + strand, within MPMX26_02312 at 2384.029 kb on + strand, within MPMX26_02312 at 2384.035 kb on + strand, within MPMX26_02312 at 2384.062 kb on + strand, within MPMX26_02312 at 2384.062 kb on + strand, within MPMX26_02312 at 2384.079 kb on + strand, within MPMX26_02312 at 2384.091 kb on + strand, within MPMX26_02312 at 2384.113 kb on + strand, within MPMX26_02312 at 2384.119 kb on + strand, within MPMX26_02312 at 2384.166 kb on + strand at 2384.166 kb on + strand at 2384.166 kb on + strand at 2384.172 kb on + strand at 2384.172 kb on + strand at 2384.198 kb on + strand at 2384.222 kb on + strand at 2384.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB remove 2,380,878 - +0.3 2,381,335 - MPMX26_02310 0.85 +0.4 2,381,987 + MPMX26_02311 0.17 -1.0 2,382,287 + MPMX26_02311 0.32 -0.3 2,382,469 + MPMX26_02311 0.41 -1.3 2,382,553 + MPMX26_02311 0.45 +0.4 2,382,553 + MPMX26_02311 0.45 -1.1 2,382,563 + MPMX26_02311 0.45 +1.2 2,382,577 + MPMX26_02311 0.46 -1.0 2,382,577 + MPMX26_02311 0.46 -0.7 2,382,587 + MPMX26_02311 0.46 +0.2 2,382,610 + MPMX26_02311 0.48 -0.2 2,382,733 + MPMX26_02311 0.54 +0.2 2,382,823 + MPMX26_02311 0.58 -0.4 2,382,896 + MPMX26_02311 0.62 -0.8 2,382,896 + MPMX26_02311 0.62 +1.2 2,382,896 + MPMX26_02311 0.62 +0.5 2,382,917 + MPMX26_02311 0.63 -0.0 2,382,925 + MPMX26_02311 0.63 -1.0 2,382,925 + MPMX26_02311 0.63 +0.2 2,382,925 + MPMX26_02311 0.63 +0.4 2,382,925 + MPMX26_02311 0.63 -0.4 2,382,925 + MPMX26_02311 0.63 -0.3 2,382,925 + MPMX26_02311 0.63 -1.3 2,382,925 + MPMX26_02311 0.63 +0.2 2,382,951 + MPMX26_02311 0.65 -0.8 2,382,967 + MPMX26_02311 0.65 +0.6 2,383,085 + MPMX26_02311 0.71 -0.8 2,383,091 + MPMX26_02311 0.72 +1.0 2,383,150 + MPMX26_02311 0.74 +0.8 2,383,163 + MPMX26_02311 0.75 +0.2 2,383,184 + MPMX26_02311 0.76 +0.1 2,383,238 + MPMX26_02311 0.79 -2.5 2,383,279 + MPMX26_02311 0.81 +0.8 2,383,279 + MPMX26_02311 0.81 +0.3 2,383,279 + MPMX26_02311 0.81 -0.7 2,383,436 + MPMX26_02311 0.89 +0.6 2,383,505 + +0.5 2,383,505 + +0.3 2,383,510 + +0.3 2,383,510 + -0.2 2,383,510 + +0.4 2,383,520 + -0.5 2,383,520 + -0.5 2,383,520 + +0.2 2,383,550 + +0.4 2,383,550 + +0.1 2,383,555 + +0.3 2,383,555 + +0.4 2,383,555 + +0.2 2,383,555 + -0.2 2,383,570 + +0.3 2,383,582 + +0.3 2,383,598 + +0.6 2,383,599 + -0.4 2,383,599 + +0.2 2,383,616 + +0.3 2,383,729 + MPMX26_02312 0.11 +1.2 2,383,729 + MPMX26_02312 0.11 +0.2 2,383,747 + MPMX26_02312 0.15 -0.3 2,383,813 + MPMX26_02312 0.27 -0.4 2,383,878 + MPMX26_02312 0.38 -0.3 2,383,890 + MPMX26_02312 0.41 +0.5 2,383,890 + MPMX26_02312 0.41 +0.5 2,383,890 + MPMX26_02312 0.41 +0.0 2,383,890 + MPMX26_02312 0.41 +0.0 2,383,890 + MPMX26_02312 0.41 -0.9 2,383,900 + MPMX26_02312 0.42 -1.2 2,383,900 + MPMX26_02312 0.42 +0.2 2,383,900 + MPMX26_02312 0.42 +0.6 2,383,900 + MPMX26_02312 0.42 +0.1 2,383,900 + MPMX26_02312 0.42 +0.6 2,383,900 + MPMX26_02312 0.42 -0.3 2,383,905 + MPMX26_02312 0.43 +0.2 2,383,905 + MPMX26_02312 0.43 +0.8 2,383,905 + MPMX26_02312 0.43 +1.2 2,383,932 + MPMX26_02312 0.48 +0.5 2,383,956 + MPMX26_02312 0.53 -0.5 2,384,029 + MPMX26_02312 0.66 -0.2 2,384,035 + MPMX26_02312 0.67 +0.5 2,384,062 + MPMX26_02312 0.72 -1.4 2,384,062 + MPMX26_02312 0.72 -0.7 2,384,079 + MPMX26_02312 0.75 +0.5 2,384,091 + MPMX26_02312 0.77 -0.3 2,384,113 + MPMX26_02312 0.81 +0.4 2,384,119 + MPMX26_02312 0.82 -0.3 2,384,166 + +0.4 2,384,166 + +0.8 2,384,166 + -0.2 2,384,172 + -0.1 2,384,172 + +0.2 2,384,198 + -1.3 2,384,222 + +0.5 2,384,228 + +0.0
Or see this region's nucleotide sequence