Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02311

Experiment: TSB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02309 and MPMX26_02310 are separated by 60 nucleotidesMPMX26_02310 and MPMX26_02311 are separated by 238 nucleotidesMPMX26_02311 and MPMX26_02312 are separated by 2 nucleotidesMPMX26_02312 and MPMX26_02313 are separated by 19 nucleotides MPMX26_02309: MPMX26_02309 - hypothetical protein, at 2,379,526 to 2,380,839 _02309 MPMX26_02310: MPMX26_02310 - hypothetical protein, at 2,380,900 to 2,381,412 _02310 MPMX26_02311: MPMX26_02311 - Peptidoglycan D,D-transpeptidase MrdA, at 2,381,651 to 2,383,663 _02311 MPMX26_02312: MPMX26_02312 - Ribosomal RNA small subunit methyltransferase D, at 2,383,666 to 2,384,217 _02312 MPMX26_02313: MPMX26_02313 - hypothetical protein, at 2,384,237 to 2,384,473 _02313 Position (kb) 2381 2382 2383 2384Strain fitness (log2 ratio) -2 -1 0 1at 2380.878 kb on - strandat 2381.335 kb on - strand, within MPMX26_02310at 2381.987 kb on + strand, within MPMX26_02311at 2382.287 kb on + strand, within MPMX26_02311at 2382.469 kb on + strand, within MPMX26_02311at 2382.553 kb on + strand, within MPMX26_02311at 2382.553 kb on + strand, within MPMX26_02311at 2382.563 kb on + strand, within MPMX26_02311at 2382.577 kb on + strand, within MPMX26_02311at 2382.577 kb on + strand, within MPMX26_02311at 2382.587 kb on + strand, within MPMX26_02311at 2382.610 kb on + strand, within MPMX26_02311at 2382.733 kb on + strand, within MPMX26_02311at 2382.823 kb on + strand, within MPMX26_02311at 2382.896 kb on + strand, within MPMX26_02311at 2382.896 kb on + strand, within MPMX26_02311at 2382.896 kb on + strand, within MPMX26_02311at 2382.917 kb on + strand, within MPMX26_02311at 2382.925 kb on + strand, within MPMX26_02311at 2382.925 kb on + strand, within MPMX26_02311at 2382.925 kb on + strand, within MPMX26_02311at 2382.925 kb on + strand, within MPMX26_02311at 2382.925 kb on + strand, within MPMX26_02311at 2382.925 kb on + strand, within MPMX26_02311at 2382.925 kb on + strand, within MPMX26_02311at 2382.951 kb on + strand, within MPMX26_02311at 2382.967 kb on + strand, within MPMX26_02311at 2383.085 kb on + strand, within MPMX26_02311at 2383.091 kb on + strand, within MPMX26_02311at 2383.150 kb on + strand, within MPMX26_02311at 2383.163 kb on + strand, within MPMX26_02311at 2383.184 kb on + strand, within MPMX26_02311at 2383.238 kb on + strand, within MPMX26_02311at 2383.279 kb on + strand, within MPMX26_02311at 2383.279 kb on + strand, within MPMX26_02311at 2383.279 kb on + strand, within MPMX26_02311at 2383.436 kb on + strand, within MPMX26_02311at 2383.505 kb on + strandat 2383.505 kb on + strandat 2383.510 kb on + strandat 2383.510 kb on + strandat 2383.510 kb on + strandat 2383.520 kb on + strandat 2383.520 kb on + strandat 2383.520 kb on + strandat 2383.550 kb on + strandat 2383.550 kb on + strandat 2383.555 kb on + strandat 2383.555 kb on + strandat 2383.555 kb on + strandat 2383.555 kb on + strandat 2383.570 kb on + strandat 2383.582 kb on + strandat 2383.598 kb on + strandat 2383.599 kb on + strandat 2383.599 kb on + strandat 2383.616 kb on + strandat 2383.729 kb on + strand, within MPMX26_02312at 2383.729 kb on + strand, within MPMX26_02312at 2383.747 kb on + strand, within MPMX26_02312at 2383.813 kb on + strand, within MPMX26_02312at 2383.878 kb on + strand, within MPMX26_02312at 2383.890 kb on + strand, within MPMX26_02312at 2383.890 kb on + strand, within MPMX26_02312at 2383.890 kb on + strand, within MPMX26_02312at 2383.890 kb on + strand, within MPMX26_02312at 2383.890 kb on + strand, within MPMX26_02312at 2383.900 kb on + strand, within MPMX26_02312at 2383.900 kb on + strand, within MPMX26_02312at 2383.900 kb on + strand, within MPMX26_02312at 2383.900 kb on + strand, within MPMX26_02312at 2383.900 kb on + strand, within MPMX26_02312at 2383.900 kb on + strand, within MPMX26_02312at 2383.905 kb on + strand, within MPMX26_02312at 2383.905 kb on + strand, within MPMX26_02312at 2383.905 kb on + strand, within MPMX26_02312at 2383.932 kb on + strand, within MPMX26_02312at 2383.956 kb on + strand, within MPMX26_02312at 2384.029 kb on + strand, within MPMX26_02312at 2384.035 kb on + strand, within MPMX26_02312at 2384.062 kb on + strand, within MPMX26_02312at 2384.062 kb on + strand, within MPMX26_02312at 2384.079 kb on + strand, within MPMX26_02312at 2384.091 kb on + strand, within MPMX26_02312at 2384.113 kb on + strand, within MPMX26_02312at 2384.119 kb on + strand, within MPMX26_02312at 2384.166 kb on + strandat 2384.166 kb on + strandat 2384.166 kb on + strandat 2384.172 kb on + strandat 2384.172 kb on + strandat 2384.198 kb on + strandat 2384.222 kb on + strandat 2384.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB
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2,380,878 - +0.3
2,381,335 - MPMX26_02310 0.85 +0.4
2,381,987 + MPMX26_02311 0.17 -1.0
2,382,287 + MPMX26_02311 0.32 -0.3
2,382,469 + MPMX26_02311 0.41 -1.3
2,382,553 + MPMX26_02311 0.45 +0.4
2,382,553 + MPMX26_02311 0.45 -1.1
2,382,563 + MPMX26_02311 0.45 +1.2
2,382,577 + MPMX26_02311 0.46 -1.0
2,382,577 + MPMX26_02311 0.46 -0.7
2,382,587 + MPMX26_02311 0.46 +0.2
2,382,610 + MPMX26_02311 0.48 -0.2
2,382,733 + MPMX26_02311 0.54 +0.2
2,382,823 + MPMX26_02311 0.58 -0.4
2,382,896 + MPMX26_02311 0.62 -0.8
2,382,896 + MPMX26_02311 0.62 +1.2
2,382,896 + MPMX26_02311 0.62 +0.5
2,382,917 + MPMX26_02311 0.63 -0.0
2,382,925 + MPMX26_02311 0.63 -1.0
2,382,925 + MPMX26_02311 0.63 +0.2
2,382,925 + MPMX26_02311 0.63 +0.4
2,382,925 + MPMX26_02311 0.63 -0.4
2,382,925 + MPMX26_02311 0.63 -0.3
2,382,925 + MPMX26_02311 0.63 -1.3
2,382,925 + MPMX26_02311 0.63 +0.2
2,382,951 + MPMX26_02311 0.65 -0.8
2,382,967 + MPMX26_02311 0.65 +0.6
2,383,085 + MPMX26_02311 0.71 -0.8
2,383,091 + MPMX26_02311 0.72 +1.0
2,383,150 + MPMX26_02311 0.74 +0.8
2,383,163 + MPMX26_02311 0.75 +0.2
2,383,184 + MPMX26_02311 0.76 +0.1
2,383,238 + MPMX26_02311 0.79 -2.5
2,383,279 + MPMX26_02311 0.81 +0.8
2,383,279 + MPMX26_02311 0.81 +0.3
2,383,279 + MPMX26_02311 0.81 -0.7
2,383,436 + MPMX26_02311 0.89 +0.6
2,383,505 + +0.5
2,383,505 + +0.3
2,383,510 + +0.3
2,383,510 + -0.2
2,383,510 + +0.4
2,383,520 + -0.5
2,383,520 + -0.5
2,383,520 + +0.2
2,383,550 + +0.4
2,383,550 + +0.1
2,383,555 + +0.3
2,383,555 + +0.4
2,383,555 + +0.2
2,383,555 + -0.2
2,383,570 + +0.3
2,383,582 + +0.3
2,383,598 + +0.6
2,383,599 + -0.4
2,383,599 + +0.2
2,383,616 + +0.3
2,383,729 + MPMX26_02312 0.11 +1.2
2,383,729 + MPMX26_02312 0.11 +0.2
2,383,747 + MPMX26_02312 0.15 -0.3
2,383,813 + MPMX26_02312 0.27 -0.4
2,383,878 + MPMX26_02312 0.38 -0.3
2,383,890 + MPMX26_02312 0.41 +0.5
2,383,890 + MPMX26_02312 0.41 +0.5
2,383,890 + MPMX26_02312 0.41 +0.0
2,383,890 + MPMX26_02312 0.41 +0.0
2,383,890 + MPMX26_02312 0.41 -0.9
2,383,900 + MPMX26_02312 0.42 -1.2
2,383,900 + MPMX26_02312 0.42 +0.2
2,383,900 + MPMX26_02312 0.42 +0.6
2,383,900 + MPMX26_02312 0.42 +0.1
2,383,900 + MPMX26_02312 0.42 +0.6
2,383,900 + MPMX26_02312 0.42 -0.3
2,383,905 + MPMX26_02312 0.43 +0.2
2,383,905 + MPMX26_02312 0.43 +0.8
2,383,905 + MPMX26_02312 0.43 +1.2
2,383,932 + MPMX26_02312 0.48 +0.5
2,383,956 + MPMX26_02312 0.53 -0.5
2,384,029 + MPMX26_02312 0.66 -0.2
2,384,035 + MPMX26_02312 0.67 +0.5
2,384,062 + MPMX26_02312 0.72 -1.4
2,384,062 + MPMX26_02312 0.72 -0.7
2,384,079 + MPMX26_02312 0.75 +0.5
2,384,091 + MPMX26_02312 0.77 -0.3
2,384,113 + MPMX26_02312 0.81 +0.4
2,384,119 + MPMX26_02312 0.82 -0.3
2,384,166 + +0.4
2,384,166 + +0.8
2,384,166 + -0.2
2,384,172 + -0.1
2,384,172 + +0.2
2,384,198 + -1.3
2,384,222 + +0.5
2,384,228 + +0.0

Or see this region's nucleotide sequence