Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01711

Experiment: TSB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01709 and MPMX26_01710 overlap by 4 nucleotidesMPMX26_01710 and MPMX26_01711 are separated by 108 nucleotidesMPMX26_01711 and MPMX26_01712 are separated by 4 nucleotidesMPMX26_01712 and MPMX26_01713 are separated by 373 nucleotides MPMX26_01709: MPMX26_01709 - Sensor protein CzcS, at 1,765,122 to 1,766,531 _01709 MPMX26_01710: MPMX26_01710 - Transcriptional activator protein CzcR, at 1,766,528 to 1,767,199 _01710 MPMX26_01711: MPMX26_01711 - hypothetical protein, at 1,767,308 to 1,767,817 _01711 MPMX26_01712: MPMX26_01712 - 5-hydroxyisourate hydrolase, at 1,767,822 to 1,768,223 _01712 MPMX26_01713: MPMX26_01713 - Metal-pseudopaline receptor CntO, at 1,768,597 to 1,770,723 _01713 Position (kb) 1767 1768Strain fitness (log2 ratio) -1 0 1at 1767.446 kb on + strand, within MPMX26_01711at 1767.497 kb on + strand, within MPMX26_01711at 1767.497 kb on + strand, within MPMX26_01711at 1767.497 kb on + strand, within MPMX26_01711at 1767.497 kb on + strand, within MPMX26_01711at 1767.526 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.595 kb on + strand, within MPMX26_01711at 1767.617 kb on + strand, within MPMX26_01711at 1767.622 kb on + strand, within MPMX26_01711at 1767.637 kb on + strand, within MPMX26_01711at 1767.656 kb on + strand, within MPMX26_01711at 1767.701 kb on + strand, within MPMX26_01711at 1767.746 kb on + strand, within MPMX26_01711at 1767.746 kb on + strand, within MPMX26_01711at 1767.746 kb on + strand, within MPMX26_01711at 1767.746 kb on + strand, within MPMX26_01711at 1768.146 kb on + strand, within MPMX26_01712at 1768.146 kb on + strand, within MPMX26_01712at 1768.146 kb on + strand, within MPMX26_01712at 1768.155 kb on + strand, within MPMX26_01712at 1768.179 kb on + strand, within MPMX26_01712at 1768.179 kb on + strand, within MPMX26_01712at 1768.199 kb on + strandat 1768.690 kb on + strandat 1768.730 kb on + strandat 1768.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB
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1,767,446 + MPMX26_01711 0.27 +0.6
1,767,497 + MPMX26_01711 0.37 +0.5
1,767,497 + MPMX26_01711 0.37 -0.0
1,767,497 + MPMX26_01711 0.37 -0.1
1,767,497 + MPMX26_01711 0.37 -0.5
1,767,526 + MPMX26_01711 0.43 -0.6
1,767,574 + MPMX26_01711 0.52 -0.0
1,767,574 + MPMX26_01711 0.52 +0.9
1,767,574 + MPMX26_01711 0.52 -0.7
1,767,574 + MPMX26_01711 0.52 -0.5
1,767,574 + MPMX26_01711 0.52 -0.1
1,767,580 + MPMX26_01711 0.53 -0.4
1,767,580 + MPMX26_01711 0.53 -0.2
1,767,580 + MPMX26_01711 0.53 +1.2
1,767,580 + MPMX26_01711 0.53 -0.0
1,767,580 + MPMX26_01711 0.53 +0.8
1,767,580 + MPMX26_01711 0.53 -0.4
1,767,580 + MPMX26_01711 0.53 -0.8
1,767,595 + MPMX26_01711 0.56 -0.4
1,767,617 + MPMX26_01711 0.61 -0.4
1,767,622 + MPMX26_01711 0.62 -0.7
1,767,637 + MPMX26_01711 0.65 -0.5
1,767,656 + MPMX26_01711 0.68 +1.6
1,767,701 + MPMX26_01711 0.77 +0.3
1,767,746 + MPMX26_01711 0.86 +0.0
1,767,746 + MPMX26_01711 0.86 +1.7
1,767,746 + MPMX26_01711 0.86 -0.7
1,767,746 + MPMX26_01711 0.86 +0.3
1,768,146 + MPMX26_01712 0.81 +0.5
1,768,146 + MPMX26_01712 0.81 +0.9
1,768,146 + MPMX26_01712 0.81 +0.0
1,768,155 + MPMX26_01712 0.83 -0.1
1,768,179 + MPMX26_01712 0.89 -0.3
1,768,179 + MPMX26_01712 0.89 +0.3
1,768,199 + +1.6
1,768,690 + -0.0
1,768,730 + +0.1
1,768,752 + -0.9

Or see this region's nucleotide sequence