Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF98

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
106,117	-				+1.4
106,120	+				-0.7
106,128	-				+1.4
106,212	+				+0.9
106,212	+				-0.4
106,219	+				-0.3
106,233	+				+1.2
106,245	+				-0.4
106,246	-				-0.1
106,269	+				-0.4
106,547	+		GFF97	0.32	-0.7
106,548	-		GFF97	0.32	+1.3
106,727	+		GFF97	0.54	+0.4
106,728	-		GFF97	0.54	+0.4
106,728	-		GFF97	0.54	-0.6
107,254	+		GFF98	0.16	-0.3
107,255	-		GFF98	0.17	+1.0
107,345	-		GFF98	0.27	+0.1
107,345	-		GFF98	0.27	+0.1
107,530	+		GFF98	0.47	+2.5
107,530	+		GFF98	0.47	-0.6
107,530	+		GFF98	0.47	+0.7
107,531	-		GFF98	0.47	+0.5
107,621	-		GFF98	0.57	-1.7
107,666	-		GFF98	0.63	-0.4
107,666	-		GFF98	0.63	-2.1
107,786	-		GFF98	0.76	+0.3
107,786	-		GFF98	0.76	-0.3
109,000	-				+0.9