Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF936 and GFF937 overlap by 4 nucleotides GFF937 and GFF938 are separated by 3 nucleotides GFF938 and GFF939 are separated by 69 nucleotides
GFF936 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 668,171 to 670,090
GFF936
GFF937 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 670,087 to 670,974
GFF937
GFF938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 670,978 to 672,030
GFF938
GFF939 - hypothetical protein, at 672,100 to 673,329
GFF939
Position (kb) 670
671
672
673 Strain fitness (log2 ratio) -1
0
1 at 670.108 kb on + strand at 670.108 kb on + strand at 670.109 kb on - strand at 670.109 kb on - strand at 670.142 kb on - strand at 670.372 kb on - strand, within GFF937 at 670.900 kb on + strand at 670.903 kb on - strand at 670.903 kb on - strand at 671.008 kb on + strand at 671.009 kb on - strand at 671.115 kb on - strand, within GFF938 at 671.120 kb on + strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.705 kb on - strand, within GFF938 at 672.111 kb on + strand at 672.112 kb on - strand at 672.112 kb on - strand at 672.223 kb on + strand, within GFF939 at 672.491 kb on - strand, within GFF939 at 672.541 kb on + strand, within GFF939 at 672.541 kb on + strand, within GFF939 at 672.676 kb on + strand, within GFF939 at 672.676 kb on + strand, within GFF939 at 672.677 kb on - strand, within GFF939 at 672.677 kb on - strand, within GFF939 at 672.904 kb on - strand, within GFF939 at 672.904 kb on - strand, within GFF939 at 672.997 kb on + strand, within GFF939
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 670,108 + +0.1 670,108 + -0.6 670,109 - -0.1 670,109 - -0.2 670,142 - +1.3 670,372 - GFF937 0.32 +0.7 670,900 + -1.7 670,903 - -0.2 670,903 - +0.0 671,008 + +0.7 671,009 - -1.3 671,115 - GFF938 0.13 +1.3 671,120 + GFF938 0.13 +0.4 671,504 - GFF938 0.50 +0.2 671,504 - GFF938 0.50 -0.4 671,504 - GFF938 0.50 +0.4 671,504 - GFF938 0.50 -0.1 671,705 - GFF938 0.69 -0.1 672,111 + -0.5 672,112 - +0.4 672,112 - -0.0 672,223 + GFF939 0.10 -1.3 672,491 - GFF939 0.32 -1.7 672,541 + GFF939 0.36 -0.0 672,541 + GFF939 0.36 +0.2 672,676 + GFF939 0.47 -0.2 672,676 + GFF939 0.47 +0.3 672,677 - GFF939 0.47 -0.1 672,677 - GFF939 0.47 -0.2 672,904 - GFF939 0.65 +0.7 672,904 - GFF939 0.65 -1.4 672,997 + GFF939 0.73 -0.1
Or see this region's nucleotide sequence