Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF852 and GFF853 are separated by 65 nucleotides
GFF852 - hypothetical protein, at 567,267 to 567,902
GFF852
GFF853 - hypothetical protein, at 567,968 to 568,288
GFF853
Position (kb) 567
568 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 566.294 kb on + strand at 566.295 kb on - strand at 566.328 kb on + strand at 566.329 kb on - strand at 566.329 kb on - strand at 566.366 kb on + strand at 566.366 kb on + strand at 566.367 kb on - strand at 566.386 kb on + strand at 566.386 kb on + strand at 566.565 kb on + strand at 566.565 kb on + strand at 566.565 kb on + strand at 566.565 kb on + strand at 566.565 kb on + strand at 566.565 kb on + strand at 566.566 kb on - strand at 566.566 kb on - strand at 566.566 kb on - strand at 566.584 kb on + strand at 566.585 kb on - strand at 566.595 kb on + strand at 566.595 kb on + strand at 566.595 kb on + strand at 566.595 kb on + strand at 566.596 kb on - strand at 566.596 kb on - strand at 566.596 kb on - strand at 566.693 kb on + strand at 566.709 kb on + strand at 566.710 kb on - strand at 566.710 kb on - strand at 566.710 kb on - strand at 566.710 kb on - strand at 566.713 kb on + strand at 566.713 kb on + strand at 566.714 kb on - strand at 566.740 kb on + strand at 566.740 kb on + strand at 566.741 kb on - strand at 566.741 kb on - strand at 566.741 kb on - strand at 566.741 kb on - strand at 566.916 kb on + strand at 566.916 kb on + strand at 566.916 kb on + strand at 566.916 kb on + strand at 566.943 kb on + strand at 566.943 kb on + strand at 566.943 kb on + strand at 566.944 kb on - strand at 566.944 kb on - strand at 566.944 kb on - strand at 566.944 kb on - strand at 566.944 kb on - strand at 566.979 kb on + strand at 566.979 kb on + strand at 566.979 kb on + strand at 566.979 kb on + strand at 566.979 kb on + strand at 566.979 kb on + strand at 566.979 kb on + strand at 566.980 kb on - strand at 566.980 kb on - strand at 567.094 kb on + strand at 567.095 kb on - strand at 567.095 kb on - strand at 567.095 kb on - strand at 567.153 kb on + strand at 567.153 kb on + strand at 567.154 kb on - strand at 567.154 kb on - strand at 567.154 kb on - strand at 567.154 kb on - strand at 567.154 kb on - strand at 567.154 kb on - strand at 567.208 kb on - strand at 567.208 kb on - strand at 567.235 kb on - strand at 567.263 kb on + strand at 567.263 kb on + strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.264 kb on - strand at 567.300 kb on + strand at 567.300 kb on + strand at 567.458 kb on + strand, within GFF852 at 567.540 kb on + strand, within GFF852 at 567.540 kb on + strand, within GFF852 at 567.540 kb on + strand, within GFF852 at 567.540 kb on + strand, within GFF852 at 567.540 kb on + strand, within GFF852 at 567.541 kb on - strand, within GFF852 at 567.693 kb on - strand, within GFF852 at 567.706 kb on - strand, within GFF852 at 567.754 kb on - strand, within GFF852 at 567.754 kb on - strand, within GFF852 at 567.835 kb on + strand, within GFF852 at 567.836 kb on - strand, within GFF852 at 567.850 kb on - strand at 568.011 kb on - strand, within GFF853 at 568.011 kb on - strand, within GFF853 at 568.079 kb on + strand, within GFF853 at 568.099 kb on + strand, within GFF853 at 568.124 kb on + strand, within GFF853 at 568.125 kb on - strand, within GFF853 at 568.125 kb on - strand, within GFF853 at 568.236 kb on + strand, within GFF853 at 568.237 kb on - strand, within GFF853 at 568.318 kb on + strand at 568.326 kb on + strand at 568.381 kb on + strand at 568.381 kb on + strand at 568.382 kb on - strand at 568.382 kb on - strand at 568.405 kb on + strand at 568.405 kb on + strand at 568.406 kb on - strand at 568.425 kb on + strand at 568.425 kb on + strand at 568.425 kb on + strand at 568.426 kb on - strand at 568.426 kb on - strand at 568.426 kb on - strand at 568.426 kb on - strand at 568.429 kb on + strand at 568.429 kb on + strand at 568.430 kb on - strand at 568.430 kb on - strand at 568.519 kb on + strand at 568.519 kb on + strand at 568.615 kb on - strand at 568.615 kb on - strand at 568.615 kb on - strand at 568.651 kb on + strand at 568.651 kb on + strand at 568.652 kb on - strand at 568.702 kb on + strand at 568.709 kb on + strand at 568.709 kb on + strand at 568.710 kb on - strand at 568.710 kb on - strand at 568.710 kb on - strand at 568.710 kb on - strand at 568.713 kb on + strand at 568.713 kb on + strand at 568.773 kb on + strand at 568.773 kb on + strand at 568.774 kb on - strand at 568.774 kb on - strand at 568.810 kb on + strand at 568.810 kb on + strand at 568.876 kb on + strand at 568.876 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 566,294 + -1.4 566,295 - -0.8 566,328 + +0.3 566,329 - -0.7 566,329 - +0.7 566,366 + -0.1 566,366 + +0.9 566,367 - +0.4 566,386 + +0.7 566,386 + +0.3 566,565 + +0.3 566,565 + -0.8 566,565 + -0.8 566,565 + -1.4 566,565 + +1.2 566,565 + +0.6 566,566 - -0.2 566,566 - +0.6 566,566 - +1.5 566,584 + -0.9 566,585 - +0.4 566,595 + +0.6 566,595 + +0.1 566,595 + +1.0 566,595 + +0.4 566,596 - -2.3 566,596 - -0.3 566,596 - +1.2 566,693 + -0.3 566,709 + -0.4 566,710 - -0.7 566,710 - +0.4 566,710 - -0.2 566,710 - -0.2 566,713 + +0.5 566,713 + +0.1 566,714 - +1.1 566,740 + +0.4 566,740 + +0.1 566,741 - -0.2 566,741 - +0.1 566,741 - +0.3 566,741 - +1.9 566,916 + +1.1 566,916 + -0.1 566,916 + +0.9 566,916 + -0.5 566,943 + -0.3 566,943 + -0.0 566,943 + -0.4 566,944 - -0.9 566,944 - +1.2 566,944 - +0.8 566,944 - -0.5 566,944 - +0.4 566,979 + -0.1 566,979 + -0.9 566,979 + +0.4 566,979 + +0.3 566,979 + +4.7 566,979 + -0.1 566,979 + -0.9 566,980 - +0.6 566,980 - -0.4 567,094 + +1.1 567,095 - -0.2 567,095 - -0.7 567,095 - +0.1 567,153 + -0.0 567,153 + +0.1 567,154 - -0.1 567,154 - -0.0 567,154 - +1.1 567,154 - -0.7 567,154 - -1.3 567,154 - +0.1 567,208 - +0.1 567,208 - -0.4 567,235 - +0.3 567,263 + +0.9 567,263 + +0.3 567,264 - +0.3 567,264 - -0.0 567,264 - +0.3 567,264 - +0.2 567,300 + -0.5 567,300 + +1.2 567,458 + GFF852 0.30 -0.0 567,540 + GFF852 0.43 +3.1 567,540 + GFF852 0.43 +0.7 567,540 + GFF852 0.43 -0.1 567,540 + GFF852 0.43 -0.5 567,540 + GFF852 0.43 -0.5 567,541 - GFF852 0.43 +0.1 567,693 - GFF852 0.67 -0.0 567,706 - GFF852 0.69 +1.7 567,754 - GFF852 0.77 +0.3 567,754 - GFF852 0.77 -1.1 567,835 + GFF852 0.89 -0.1 567,836 - GFF852 0.89 -0.3 567,850 - +0.5 568,011 - GFF853 0.13 +0.1 568,011 - GFF853 0.13 -0.1 568,079 + GFF853 0.35 +1.2 568,099 + GFF853 0.41 +0.5 568,124 + GFF853 0.49 -0.2 568,125 - GFF853 0.49 +0.2 568,125 - GFF853 0.49 +0.3 568,236 + GFF853 0.83 -0.2 568,237 - GFF853 0.84 +0.6 568,318 + +0.7 568,326 + -1.0 568,381 + -1.3 568,381 + -0.8 568,382 - -0.6 568,382 - -0.1 568,405 + +0.7 568,405 + +0.3 568,406 - -0.0 568,425 + +0.3 568,425 + -0.1 568,425 + -0.3 568,426 - -0.5 568,426 - +0.3 568,426 - -0.6 568,426 - +0.2 568,429 + +0.1 568,429 + -1.0 568,430 - +0.5 568,430 - +0.5 568,519 + +0.2 568,519 + -1.0 568,615 - +0.2 568,615 - -0.0 568,615 - -0.5 568,651 + -0.0 568,651 + +0.4 568,652 - +1.2 568,702 + +0.1 568,709 + -0.6 568,709 + +0.1 568,710 - +0.0 568,710 - +0.6 568,710 - -0.1 568,710 - -1.6 568,713 + +0.5 568,713 + -0.8 568,773 + -0.3 568,773 + -0.2 568,774 - +0.9 568,774 - +1.1 568,810 + +0.1 568,810 + -0.2 568,876 + -0.9 568,876 + +0.5
Or see this region's nucleotide sequence