Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF832 and GFF833 are separated by 95 nucleotides GFF833 and GFF834 are separated by 807 nucleotides
GFF832 - hypothetical protein, at 530,548 to 531,810
GFF832
GFF833 - hypothetical protein, at 531,906 to 532,022
GFF833
GFF834 - hypothetical protein, at 532,830 to 533,018
GFF834
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1 at 531.000 kb on + strand, within GFF832 at 531.001 kb on - strand, within GFF832 at 531.013 kb on + strand, within GFF832 at 531.013 kb on + strand, within GFF832 at 531.013 kb on + strand, within GFF832 at 531.013 kb on + strand, within GFF832 at 531.014 kb on - strand, within GFF832 at 531.214 kb on + strand, within GFF832 at 531.214 kb on + strand, within GFF832 at 531.215 kb on - strand, within GFF832 at 531.215 kb on - strand, within GFF832 at 531.259 kb on + strand, within GFF832 at 531.259 kb on + strand, within GFF832 at 531.259 kb on + strand, within GFF832 at 531.260 kb on - strand, within GFF832 at 531.260 kb on - strand, within GFF832 at 531.299 kb on - strand, within GFF832 at 531.616 kb on + strand, within GFF832 at 531.630 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.635 kb on + strand, within GFF832 at 531.636 kb on - strand, within GFF832 at 531.687 kb on + strand at 531.767 kb on + strand at 531.767 kb on + strand at 531.767 kb on + strand at 531.768 kb on - strand at 531.806 kb on + strand at 531.806 kb on + strand at 531.807 kb on - strand at 531.807 kb on - strand at 531.807 kb on - strand at 531.855 kb on + strand at 531.855 kb on + strand at 531.858 kb on + strand at 531.859 kb on - strand at 531.986 kb on - strand, within GFF833 at 531.986 kb on - strand, within GFF833 at 531.986 kb on - strand, within GFF833 at 532.396 kb on - strand at 532.539 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.686 kb on + strand at 532.687 kb on - strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.780 kb on + strand at 532.781 kb on - strand at 532.796 kb on + strand at 532.796 kb on + strand at 532.796 kb on + strand at 532.797 kb on - strand at 532.897 kb on + strand, within GFF834 at 532.897 kb on + strand, within GFF834 at 532.968 kb on + strand, within GFF834
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 531,000 + GFF832 0.36 +1.3 531,001 - GFF832 0.36 -2.0 531,013 + GFF832 0.37 +0.7 531,013 + GFF832 0.37 -0.2 531,013 + GFF832 0.37 +0.9 531,013 + GFF832 0.37 +0.0 531,014 - GFF832 0.37 +0.3 531,214 + GFF832 0.53 +0.6 531,214 + GFF832 0.53 +0.8 531,215 - GFF832 0.53 +0.1 531,215 - GFF832 0.53 -1.4 531,259 + GFF832 0.56 -1.3 531,259 + GFF832 0.56 -0.5 531,259 + GFF832 0.56 -0.1 531,260 - GFF832 0.56 -0.4 531,260 - GFF832 0.56 -0.6 531,299 - GFF832 0.59 +0.2 531,616 + GFF832 0.85 -0.1 531,630 + GFF832 0.86 +0.1 531,635 + GFF832 0.86 -0.6 531,635 + GFF832 0.86 +1.4 531,635 + GFF832 0.86 -1.8 531,635 + GFF832 0.86 +0.4 531,635 + GFF832 0.86 -0.1 531,635 + GFF832 0.86 -0.2 531,636 - GFF832 0.86 -0.9 531,687 + -0.2 531,767 + -0.3 531,767 + -0.8 531,767 + -0.6 531,768 - -0.1 531,806 + +0.0 531,806 + +0.1 531,807 - -0.9 531,807 - +0.2 531,807 - -0.6 531,855 + -1.1 531,855 + -0.4 531,858 + +0.6 531,859 - +0.3 531,986 - GFF833 0.68 +1.4 531,986 - GFF833 0.68 +0.1 531,986 - GFF833 0.68 +0.4 532,396 - -1.1 532,539 + +0.1 532,686 + -0.3 532,686 + +0.2 532,686 + -0.9 532,686 + +0.8 532,687 - -0.6 532,780 + +0.6 532,780 + -0.1 532,780 + -0.4 532,780 + -0.1 532,780 + -2.1 532,781 - -0.1 532,796 + +0.8 532,796 + -0.1 532,796 + -0.9 532,797 - -0.1 532,897 + GFF834 0.35 +0.3 532,897 + GFF834 0.35 +0.2 532,968 + GFF834 0.73 -1.0
Or see this region's nucleotide sequence