Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF826 and GFF827 overlap by 4 nucleotides GFF827 and GFF828 overlap by 4 nucleotides GFF828 and GFF829 are separated by 15 nucleotides
GFF826 - hypothetical protein, at 520,603 to 522,552
GFF826
GFF827 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 522,549 to 523,643
GFF827
GFF828 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 523,640 to 524,563
GFF828
GFF829 - DNA repair protein RecN, at 524,579 to 526,201
GFF829
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 521.992 kb on + strand, within GFF826 at 521.992 kb on + strand, within GFF826 at 521.992 kb on + strand, within GFF826 at 521.992 kb on + strand, within GFF826 at 521.993 kb on - strand, within GFF826 at 521.993 kb on - strand, within GFF826 at 522.100 kb on + strand, within GFF826 at 522.145 kb on + strand, within GFF826 at 522.146 kb on - strand, within GFF826 at 522.146 kb on - strand, within GFF826 at 522.187 kb on + strand, within GFF826 at 522.187 kb on + strand, within GFF826 at 522.188 kb on - strand, within GFF826 at 522.188 kb on - strand, within GFF826 at 522.188 kb on - strand, within GFF826 at 522.277 kb on + strand, within GFF826 at 522.278 kb on - strand, within GFF826 at 522.278 kb on - strand, within GFF826 at 522.678 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.739 kb on - strand, within GFF827 at 522.739 kb on - strand, within GFF827 at 522.739 kb on - strand, within GFF827 at 522.739 kb on - strand, within GFF827 at 522.742 kb on - strand, within GFF827 at 522.831 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.835 kb on - strand, within GFF827 at 522.835 kb on - strand, within GFF827 at 522.835 kb on - strand, within GFF827 at 523.137 kb on + strand, within GFF827 at 523.138 kb on - strand, within GFF827 at 523.389 kb on + strand, within GFF827 at 523.389 kb on + strand, within GFF827 at 523.389 kb on + strand, within GFF827 at 523.389 kb on + strand, within GFF827 at 523.390 kb on - strand, within GFF827 at 523.390 kb on - strand, within GFF827 at 523.641 kb on + strand at 523.641 kb on + strand at 523.641 kb on + strand at 523.642 kb on - strand at 523.642 kb on - strand at 523.642 kb on - strand at 523.642 kb on - strand at 523.800 kb on + strand, within GFF828 at 523.801 kb on - strand, within GFF828 at 523.801 kb on - strand, within GFF828 at 523.896 kb on + strand, within GFF828 at 523.897 kb on - strand, within GFF828 at 523.948 kb on - strand, within GFF828 at 524.460 kb on + strand, within GFF828
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 521,992 + GFF826 0.71 -1.3 521,992 + GFF826 0.71 -1.4 521,992 + GFF826 0.71 -0.3 521,992 + GFF826 0.71 -0.2 521,993 - GFF826 0.71 -0.6 521,993 - GFF826 0.71 +0.5 522,100 + GFF826 0.77 -1.0 522,145 + GFF826 0.79 -0.6 522,146 - GFF826 0.79 -0.2 522,146 - GFF826 0.79 +1.3 522,187 + GFF826 0.81 +0.0 522,187 + GFF826 0.81 -1.2 522,188 - GFF826 0.81 -0.3 522,188 - GFF826 0.81 +1.2 522,188 - GFF826 0.81 -3.1 522,277 + GFF826 0.86 -1.5 522,278 - GFF826 0.86 -1.2 522,278 - GFF826 0.86 +0.9 522,678 + GFF827 0.12 +1.2 522,738 + GFF827 0.17 -1.9 522,738 + GFF827 0.17 -0.5 522,738 + GFF827 0.17 +0.2 522,738 + GFF827 0.17 -0.2 522,738 + GFF827 0.17 +0.8 522,738 + GFF827 0.17 -0.1 522,739 - GFF827 0.17 +0.2 522,739 - GFF827 0.17 +1.0 522,739 - GFF827 0.17 +0.5 522,739 - GFF827 0.17 +0.7 522,742 - GFF827 0.18 +0.1 522,831 + GFF827 0.26 +0.8 522,834 + GFF827 0.26 -0.1 522,834 + GFF827 0.26 -0.1 522,834 + GFF827 0.26 +0.0 522,834 + GFF827 0.26 -0.6 522,834 + GFF827 0.26 +0.3 522,834 + GFF827 0.26 -0.3 522,835 - GFF827 0.26 +0.0 522,835 - GFF827 0.26 -0.2 522,835 - GFF827 0.26 -0.2 523,137 + GFF827 0.54 +0.1 523,138 - GFF827 0.54 -0.2 523,389 + GFF827 0.77 -0.4 523,389 + GFF827 0.77 +0.7 523,389 + GFF827 0.77 +0.8 523,389 + GFF827 0.77 +1.1 523,390 - GFF827 0.77 +0.0 523,390 - GFF827 0.77 +1.5 523,641 + -0.4 523,641 + -0.6 523,641 + -0.8 523,642 - +0.1 523,642 - +0.5 523,642 - -0.2 523,642 - +1.0 523,800 + GFF828 0.17 +3.7 523,801 - GFF828 0.17 +1.7 523,801 - GFF828 0.17 +1.6 523,896 + GFF828 0.28 +1.4 523,897 - GFF828 0.28 +2.5 523,948 - GFF828 0.33 +1.4 524,460 + GFF828 0.89 +2.2
Or see this region's nucleotide sequence