Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF807 and GFF808 are separated by 17 nucleotides GFF808 and GFF809 are separated by 5 nucleotides GFF809 and GFF810 are separated by 4 nucleotides GFF810 and GFF811 are separated by 106 nucleotides
GFF807 - Selenide,water dikinase (EC 2.7.9.3), at 502,917 to 504,002
GFF807
GFF808 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 504,020 to 504,403
GFF808
GFF809 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 504,409 to 505,116
GFF809
GFF810 - FIG00932425: hypothetical protein, at 505,121 to 505,912
GFF810
GFF811 - NADH dehydrogenase-like protein / Selenide,water dikinase (EC 2.7.9.3), at 506,019 to 507,161
GFF811
Position (kb) 504
505
506 Strain fitness (log2 ratio) -1
0
1
2 at 503.541 kb on + strand, within GFF807 at 503.788 kb on - strand, within GFF807 at 503.788 kb on - strand, within GFF807 at 503.919 kb on + strand at 504.132 kb on - strand, within GFF808 at 504.248 kb on + strand, within GFF808 at 504.248 kb on + strand, within GFF808 at 504.248 kb on + strand, within GFF808 at 504.248 kb on + strand, within GFF808 at 504.248 kb on + strand, within GFF808 at 504.248 kb on + strand, within GFF808 at 504.249 kb on - strand, within GFF808 at 504.249 kb on - strand, within GFF808 at 504.557 kb on - strand, within GFF809 at 504.871 kb on + strand, within GFF809 at 504.871 kb on + strand, within GFF809 at 504.871 kb on + strand, within GFF809 at 504.892 kb on + strand, within GFF809 at 504.892 kb on + strand, within GFF809 at 504.893 kb on - strand, within GFF809 at 504.893 kb on - strand, within GFF809 at 504.893 kb on - strand, within GFF809 at 505.000 kb on + strand, within GFF809 at 505.000 kb on + strand, within GFF809 at 505.001 kb on - strand, within GFF809 at 505.001 kb on - strand, within GFF809 at 505.001 kb on - strand, within GFF809 at 505.001 kb on - strand, within GFF809 at 505.122 kb on + strand at 505.123 kb on - strand at 505.209 kb on + strand, within GFF810 at 505.210 kb on - strand, within GFF810 at 505.210 kb on - strand, within GFF810 at 505.210 kb on - strand, within GFF810 at 505.489 kb on - strand, within GFF810 at 505.540 kb on - strand, within GFF810 at 505.596 kb on + strand, within GFF810 at 505.596 kb on + strand, within GFF810 at 505.596 kb on + strand, within GFF810 at 505.597 kb on - strand, within GFF810 at 505.597 kb on - strand, within GFF810 at 505.597 kb on - strand, within GFF810 at 505.597 kb on - strand, within GFF810 at 505.741 kb on - strand, within GFF810 at 505.741 kb on - strand, within GFF810 at 505.782 kb on + strand, within GFF810 at 505.782 kb on + strand, within GFF810 at 505.782 kb on + strand, within GFF810 at 505.783 kb on - strand, within GFF810 at 505.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 503,541 + GFF807 0.57 -0.3 503,788 - GFF807 0.80 -0.2 503,788 - GFF807 0.80 -0.5 503,919 + -0.7 504,132 - GFF808 0.29 -0.2 504,248 + GFF808 0.59 +0.8 504,248 + GFF808 0.59 +0.2 504,248 + GFF808 0.59 -0.4 504,248 + GFF808 0.59 -0.3 504,248 + GFF808 0.59 -0.2 504,248 + GFF808 0.59 +0.8 504,249 - GFF808 0.60 -0.4 504,249 - GFF808 0.60 -0.4 504,557 - GFF809 0.21 +0.0 504,871 + GFF809 0.65 +0.5 504,871 + GFF809 0.65 -0.3 504,871 + GFF809 0.65 -0.8 504,892 + GFF809 0.68 -1.3 504,892 + GFF809 0.68 -0.4 504,893 - GFF809 0.68 -0.8 504,893 - GFF809 0.68 -0.5 504,893 - GFF809 0.68 +0.1 505,000 + GFF809 0.83 -1.6 505,000 + GFF809 0.83 -0.0 505,001 - GFF809 0.84 -1.3 505,001 - GFF809 0.84 +0.4 505,001 - GFF809 0.84 -0.2 505,001 - GFF809 0.84 -0.8 505,122 + -0.4 505,123 - -0.8 505,209 + GFF810 0.11 +0.1 505,210 - GFF810 0.11 +0.8 505,210 - GFF810 0.11 -0.2 505,210 - GFF810 0.11 -0.2 505,489 - GFF810 0.46 -0.2 505,540 - GFF810 0.53 -0.4 505,596 + GFF810 0.60 +1.8 505,596 + GFF810 0.60 +0.7 505,596 + GFF810 0.60 -0.6 505,597 - GFF810 0.60 +2.7 505,597 - GFF810 0.60 +0.1 505,597 - GFF810 0.60 -1.5 505,597 - GFF810 0.60 +0.5 505,741 - GFF810 0.78 -1.3 505,741 - GFF810 0.78 -1.0 505,782 + GFF810 0.83 -1.0 505,782 + GFF810 0.83 -1.6 505,782 + GFF810 0.83 -0.2 505,783 - GFF810 0.84 -0.2 505,956 - -0.4
Or see this region's nucleotide sequence