Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF805 and GFF806 are separated by 6 nucleotides GFF806 and GFF807 are separated by 314 nucleotides
GFF805 - ABC transporter ATP-binding protein, at 500,464 to 501,465
GFF805
GFF806 - Homoserine dehydrogenase (EC 1.1.1.3), at 501,472 to 502,602
GFF806
GFF807 - Selenide,water dikinase (EC 2.7.9.3), at 502,917 to 504,002
GFF807
Position (kb) 501
502
503 Strain fitness (log2 ratio) -1
0
1
2 at 500.582 kb on - strand, within GFF805 at 500.587 kb on + strand, within GFF805 at 500.638 kb on + strand, within GFF805 at 500.639 kb on - strand, within GFF805 at 500.789 kb on - strand, within GFF805 at 500.815 kb on + strand, within GFF805 at 501.232 kb on + strand, within GFF805 at 501.233 kb on - strand, within GFF805 at 501.352 kb on + strand, within GFF805 at 501.352 kb on + strand, within GFF805 at 501.463 kb on + strand at 501.497 kb on + strand at 501.497 kb on + strand at 501.628 kb on + strand, within GFF806 at 501.717 kb on - strand, within GFF806 at 501.744 kb on - strand, within GFF806 at 501.890 kb on + strand, within GFF806 at 501.891 kb on - strand, within GFF806 at 502.217 kb on + strand, within GFF806 at 502.217 kb on + strand, within GFF806 at 502.289 kb on + strand, within GFF806 at 502.289 kb on + strand, within GFF806 at 502.289 kb on + strand, within GFF806 at 502.290 kb on - strand, within GFF806 at 502.671 kb on + strand at 502.672 kb on - strand at 502.672 kb on - strand at 502.672 kb on - strand at 502.672 kb on - strand at 502.790 kb on + strand at 502.790 kb on + strand at 502.791 kb on - strand at 502.791 kb on - strand at 502.791 kb on - strand at 502.818 kb on - strand at 502.818 kb on - strand at 502.818 kb on - strand at 502.829 kb on + strand at 502.970 kb on + strand at 503.223 kb on + strand, within GFF807 at 503.392 kb on - strand, within GFF807 at 503.392 kb on - strand, within GFF807 at 503.392 kb on - strand, within GFF807 at 503.541 kb on + strand, within GFF807
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 500,582 - GFF805 0.12 -0.6 500,587 + GFF805 0.12 -0.1 500,638 + GFF805 0.17 -0.8 500,639 - GFF805 0.17 -0.6 500,789 - GFF805 0.32 -0.4 500,815 + GFF805 0.35 -0.8 501,232 + GFF805 0.77 +0.4 501,233 - GFF805 0.77 +0.1 501,352 + GFF805 0.89 -0.0 501,352 + GFF805 0.89 +0.2 501,463 + -0.2 501,497 + +0.0 501,497 + -0.6 501,628 + GFF806 0.14 -0.5 501,717 - GFF806 0.22 -0.3 501,744 - GFF806 0.24 +1.1 501,890 + GFF806 0.37 -0.4 501,891 - GFF806 0.37 -1.0 502,217 + GFF806 0.66 +2.0 502,217 + GFF806 0.66 +1.1 502,289 + GFF806 0.72 -1.0 502,289 + GFF806 0.72 -0.5 502,289 + GFF806 0.72 -0.5 502,290 - GFF806 0.72 -0.2 502,671 + -1.6 502,672 - +0.4 502,672 - -0.7 502,672 - -0.4 502,672 - -0.8 502,790 + -0.3 502,790 + -1.2 502,791 - -0.4 502,791 - -0.1 502,791 - +0.0 502,818 - -0.3 502,818 - -1.6 502,818 - +0.4 502,829 + -1.4 502,970 + -0.9 503,223 + GFF807 0.28 +0.4 503,392 - GFF807 0.44 -1.3 503,392 - GFF807 0.44 +0.2 503,392 - GFF807 0.44 -0.5 503,541 + GFF807 0.57 -0.3
Or see this region's nucleotide sequence