Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF801 and GFF802 are separated by 91 nucleotides GFF802 and GFF803 are separated by 73 nucleotides GFF803 and GFF804 are separated by 4 nucleotides
GFF801 - Permease of the drug/metabolite transporter (DMT) superfamily, at 496,276 to 497,244
GFF801
GFF802 - NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor), at 497,336 to 497,914
GFF802
GFF803 - PQQ-dependent oxidoreductase, gdhB family, at 497,988 to 499,121
GFF803
GFF804 - FIG00347536: hypothetical protein, at 499,126 to 500,454
GFF804
Position (kb) 497
498
499
500 Strain fitness (log2 ratio) -1
0
1
2
3 at 496.996 kb on + strand, within GFF801 at 496.997 kb on - strand, within GFF801 at 496.997 kb on - strand, within GFF801 at 497.050 kb on + strand, within GFF801 at 497.050 kb on + strand, within GFF801 at 497.050 kb on + strand, within GFF801 at 497.263 kb on + strand at 497.263 kb on + strand at 497.447 kb on + strand, within GFF802 at 497.447 kb on + strand, within GFF802 at 497.448 kb on - strand, within GFF802 at 497.448 kb on - strand, within GFF802 at 497.601 kb on - strand, within GFF802 at 497.601 kb on - strand, within GFF802 at 497.852 kb on + strand, within GFF802 at 498.507 kb on + strand, within GFF803 at 498.753 kb on + strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.754 kb on - strand, within GFF803 at 498.787 kb on - strand, within GFF803 at 498.787 kb on - strand, within GFF803 at 499.204 kb on + strand at 499.405 kb on + strand, within GFF804 at 499.405 kb on + strand, within GFF804 at 499.405 kb on + strand, within GFF804 at 499.406 kb on - strand, within GFF804 at 499.408 kb on + strand, within GFF804 at 499.408 kb on + strand, within GFF804 at 499.408 kb on + strand, within GFF804
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 496,996 + GFF801 0.74 -0.6 496,997 - GFF801 0.74 +0.7 496,997 - GFF801 0.74 -0.1 497,050 + GFF801 0.80 +0.2 497,050 + GFF801 0.80 -0.5 497,050 + GFF801 0.80 -0.5 497,263 + -0.6 497,263 + +1.0 497,447 + GFF802 0.19 -0.5 497,447 + GFF802 0.19 -1.2 497,448 - GFF802 0.19 +0.4 497,448 - GFF802 0.19 -0.2 497,601 - GFF802 0.46 +0.3 497,601 - GFF802 0.46 -0.8 497,852 + GFF802 0.89 -0.0 498,507 + GFF803 0.46 +2.0 498,753 + GFF803 0.67 +2.0 498,754 - GFF803 0.68 +2.3 498,754 - GFF803 0.68 +2.8 498,754 - GFF803 0.68 +2.9 498,754 - GFF803 0.68 +2.1 498,754 - GFF803 0.68 +2.1 498,787 - GFF803 0.70 +2.5 498,787 - GFF803 0.70 +2.1 499,204 + -0.9 499,405 + GFF804 0.21 +0.2 499,405 + GFF804 0.21 -0.1 499,405 + GFF804 0.21 +0.5 499,406 - GFF804 0.21 -0.5 499,408 + GFF804 0.21 +0.2 499,408 + GFF804 0.21 -0.2 499,408 + GFF804 0.21 +0.6
Or see this region's nucleotide sequence