Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF80

Experiment: Ying_all64 rep C; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF79 and GFF80 are separated by 106 nucleotidesGFF80 and GFF81 are separated by 4 nucleotidesGFF81 and GFF82 are separated by 18 nucleotides GFF79 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 79,223 to 89,392 GFF79 GFF80 - MotA/TolQ/ExbB proton channel family protein, at 89,499 to 91,241 GFF80 GFF81 - Biopolymer transport protein ExbD/TolR, at 91,246 to 91,656 GFF81 GFF82 - Ferric siderophore transport system, periplasmic binding protein TonB, at 91,675 to 92,337 GFF82 Position (kb) 89 90 91 92Strain fitness (log2 ratio) -1 0 1at 88.545 kb on - strandat 89.847 kb on + strand, within GFF80at 89.848 kb on - strand, within GFF80at 89.917 kb on - strand, within GFF80at 91.144 kb on - strandat 91.231 kb on - strandat 91.231 kb on - strandat 91.750 kb on + strand, within GFF82

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
remove
88,545 - -1.2
89,847 + GFF80 0.20 -0.3
89,848 - GFF80 0.20 +0.5
89,917 - GFF80 0.24 +0.5
91,144 - +0.8
91,231 - -0.0
91,231 - +0.0
91,750 + GFF82 0.11 -0.5

Or see this region's nucleotide sequence