Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF765 and GFF766 are separated by 79 nucleotides GFF766 and GFF767 are separated by 23 nucleotides GFF767 and GFF768 are separated by 0 nucleotides
GFF765 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 458,415 to 459,596
GFF765
GFF766 - Virulence factor mviM, at 459,676 to 460,407
GFF766
GFF767 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 460,431 to 461,015
GFF767
GFF768 - Peptide chain release factor 3, at 461,016 to 462,635
GFF768
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.890 kb on + strand, within GFF765 at 459.104 kb on - strand, within GFF765 at 459.145 kb on + strand, within GFF765 at 459.145 kb on + strand, within GFF765 at 459.145 kb on + strand, within GFF765 at 459.145 kb on + strand, within GFF765 at 459.146 kb on - strand, within GFF765 at 459.146 kb on - strand, within GFF765 at 459.146 kb on - strand, within GFF765 at 459.146 kb on - strand, within GFF765 at 459.214 kb on + strand, within GFF765 at 459.998 kb on + strand, within GFF766 at 459.999 kb on - strand, within GFF766 at 459.999 kb on - strand, within GFF766 at 460.118 kb on + strand, within GFF766 at 460.274 kb on + strand, within GFF766 at 460.275 kb on - strand, within GFF766 at 460.275 kb on - strand, within GFF766 at 460.275 kb on - strand, within GFF766 at 460.275 kb on - strand, within GFF766 at 460.408 kb on + strand at 460.408 kb on + strand at 460.408 kb on + strand at 460.408 kb on + strand at 460.408 kb on + strand at 460.409 kb on - strand at 460.409 kb on - strand at 460.409 kb on - strand at 460.409 kb on - strand at 460.409 kb on - strand at 460.746 kb on + strand, within GFF767 at 460.746 kb on + strand, within GFF767 at 460.747 kb on - strand, within GFF767 at 460.977 kb on + strand at 460.977 kb on + strand at 461.242 kb on + strand, within GFF768 at 461.242 kb on + strand, within GFF768 at 461.243 kb on - strand, within GFF768 at 461.275 kb on + strand, within GFF768 at 461.276 kb on - strand, within GFF768 at 461.276 kb on - strand, within GFF768 at 461.276 kb on - strand, within GFF768
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 458,890 + GFF765 0.40 +1.3 459,104 - GFF765 0.58 +0.6 459,145 + GFF765 0.62 -0.3 459,145 + GFF765 0.62 -0.3 459,145 + GFF765 0.62 +0.9 459,145 + GFF765 0.62 -0.3 459,146 - GFF765 0.62 -0.1 459,146 - GFF765 0.62 -0.4 459,146 - GFF765 0.62 -0.6 459,146 - GFF765 0.62 -0.7 459,214 + GFF765 0.68 +0.7 459,998 + GFF766 0.44 +0.1 459,999 - GFF766 0.44 -0.6 459,999 - GFF766 0.44 +0.8 460,118 + GFF766 0.60 +0.6 460,274 + GFF766 0.82 -0.3 460,275 - GFF766 0.82 -1.2 460,275 - GFF766 0.82 -0.5 460,275 - GFF766 0.82 -0.7 460,275 - GFF766 0.82 +0.0 460,408 + -0.0 460,408 + +0.1 460,408 + -0.1 460,408 + +0.2 460,408 + -1.0 460,409 - +0.7 460,409 - -0.2 460,409 - -0.3 460,409 - +0.3 460,409 - -0.2 460,746 + GFF767 0.54 -2.5 460,746 + GFF767 0.54 -1.6 460,747 - GFF767 0.54 -0.6 460,977 + -1.8 460,977 + -1.3 461,242 + GFF768 0.14 +2.0 461,242 + GFF768 0.14 +1.5 461,243 - GFF768 0.14 +2.2 461,275 + GFF768 0.16 +0.7 461,276 - GFF768 0.16 +0.8 461,276 - GFF768 0.16 +1.4 461,276 - GFF768 0.16 +0.8
Or see this region's nucleotide sequence