Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF761 and GFF762 are separated by 258 nucleotides GFF762 and GFF763 are separated by 10 nucleotides GFF763 and GFF764 are separated by 4 nucleotides
GFF761 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 454,071 to 455,081
GFF761
GFF762 - HNH endonuclease family protein, at 455,340 to 455,897
GFF762
GFF763 - bll0558; unknown protein, at 455,908 to 457,284
GFF763
GFF764 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 457,289 to 458,404
GFF764
Position (kb) 455
456
457
458 Strain fitness (log2 ratio) -1
0
1
2 at 455.172 kb on + strand at 455.233 kb on + strand at 455.233 kb on + strand at 455.233 kb on + strand at 455.233 kb on + strand at 455.234 kb on - strand at 455.234 kb on - strand at 455.234 kb on - strand at 455.234 kb on - strand at 455.234 kb on - strand at 455.234 kb on - strand at 455.234 kb on - strand at 455.234 kb on - strand at 455.236 kb on - strand at 455.252 kb on - strand at 455.252 kb on - strand at 455.252 kb on - strand at 455.252 kb on - strand at 455.412 kb on + strand, within GFF762 at 455.779 kb on - strand, within GFF762 at 455.779 kb on - strand, within GFF762 at 455.787 kb on + strand, within GFF762 at 455.787 kb on + strand, within GFF762 at 455.788 kb on - strand, within GFF762 at 455.913 kb on - strand at 455.913 kb on - strand at 456.117 kb on - strand, within GFF763 at 456.227 kb on + strand, within GFF763 at 456.228 kb on - strand, within GFF763 at 456.228 kb on - strand, within GFF763 at 456.228 kb on - strand, within GFF763 at 456.228 kb on - strand, within GFF763 at 456.380 kb on + strand, within GFF763 at 456.380 kb on + strand, within GFF763 at 456.380 kb on + strand, within GFF763 at 456.381 kb on - strand, within GFF763 at 456.914 kb on + strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 456.915 kb on - strand, within GFF763 at 457.392 kb on + strand at 457.393 kb on - strand at 457.407 kb on + strand, within GFF764 at 457.407 kb on + strand, within GFF764 at 457.408 kb on - strand, within GFF764 at 457.548 kb on + strand, within GFF764 at 457.548 kb on + strand, within GFF764 at 457.548 kb on + strand, within GFF764 at 457.549 kb on - strand, within GFF764 at 457.549 kb on - strand, within GFF764 at 457.549 kb on - strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.551 kb on + strand, within GFF764 at 457.552 kb on - strand, within GFF764 at 457.552 kb on - strand, within GFF764 at 457.552 kb on - strand, within GFF764 at 457.659 kb on + strand, within GFF764 at 457.659 kb on + strand, within GFF764 at 457.660 kb on - strand, within GFF764 at 458.241 kb on + strand, within GFF764 at 458.241 kb on + strand, within GFF764 at 458.242 kb on - strand, within GFF764 at 458.242 kb on - strand, within GFF764 at 458.242 kb on - strand, within GFF764
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 455,172 + -1.2 455,233 + -0.2 455,233 + +0.0 455,233 + -0.6 455,233 + +0.2 455,234 - +1.5 455,234 - +0.9 455,234 - -0.9 455,234 - +0.4 455,234 - -1.4 455,234 - -1.1 455,234 - +0.5 455,234 - +2.0 455,236 - -0.1 455,252 - -0.1 455,252 - +1.0 455,252 - -1.1 455,252 - +0.8 455,412 + GFF762 0.13 -0.7 455,779 - GFF762 0.79 +0.1 455,779 - GFF762 0.79 +0.2 455,787 + GFF762 0.80 -0.8 455,787 + GFF762 0.80 -0.2 455,788 - GFF762 0.80 +0.1 455,913 - -0.1 455,913 - +0.1 456,117 - GFF763 0.15 -0.8 456,227 + GFF763 0.23 -0.7 456,228 - GFF763 0.23 -0.0 456,228 - GFF763 0.23 +0.1 456,228 - GFF763 0.23 +0.0 456,228 - GFF763 0.23 +1.2 456,380 + GFF763 0.34 -0.5 456,380 + GFF763 0.34 -0.3 456,380 + GFF763 0.34 +0.1 456,381 - GFF763 0.34 +0.3 456,914 + GFF763 0.73 -0.6 456,915 - GFF763 0.73 +0.3 456,915 - GFF763 0.73 +0.1 456,915 - GFF763 0.73 +1.9 456,915 - GFF763 0.73 +1.0 456,915 - GFF763 0.73 +0.7 457,392 + -0.1 457,393 - -0.9 457,407 + GFF764 0.11 -0.7 457,407 + GFF764 0.11 -0.5 457,408 - GFF764 0.11 +0.4 457,548 + GFF764 0.23 -0.7 457,548 + GFF764 0.23 +0.3 457,548 + GFF764 0.23 -0.1 457,549 - GFF764 0.23 -0.6 457,549 - GFF764 0.23 -0.2 457,549 - GFF764 0.23 -0.2 457,551 + GFF764 0.23 +0.2 457,551 + GFF764 0.23 -0.2 457,551 + GFF764 0.23 -0.5 457,551 + GFF764 0.23 -0.2 457,551 + GFF764 0.23 -0.3 457,552 - GFF764 0.24 -0.4 457,552 - GFF764 0.24 -0.6 457,552 - GFF764 0.24 -1.5 457,659 + GFF764 0.33 +0.1 457,659 + GFF764 0.33 +0.3 457,660 - GFF764 0.33 +0.2 458,241 + GFF764 0.85 -0.2 458,241 + GFF764 0.85 +0.5 458,242 - GFF764 0.85 -0.3 458,242 - GFF764 0.85 -0.1 458,242 - GFF764 0.85 -1.1
Or see this region's nucleotide sequence