Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF665

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF663 and GFF664 are separated by 52 nucleotidesGFF664 and GFF665 are separated by 9 nucleotidesGFF665 and GFF666 are separated by 80 nucleotides GFF663 - Ferric iron ABC transporter, permease protein, at 345,508 to 347,115 GFF663 GFF664 - FIG00932412: hypothetical protein, at 347,168 to 347,611 GFF664 GFF665 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 347,621 to 348,052 GFF665 GFF666 - Fused spore maturation proteins A and B, at 348,133 to 349,425 GFF666 Position (kb) 347 348 349Strain fitness (log2 ratio) -1 0 1 2at 346.624 kb on + strand, within GFF663at 346.624 kb on + strand, within GFF663at 346.624 kb on + strand, within GFF663at 346.711 kb on + strand, within GFF663at 346.712 kb on - strand, within GFF663at 346.712 kb on - strand, within GFF663at 346.712 kb on - strand, within GFF663at 347.002 kb on + strandat 347.114 kb on - strandat 347.158 kb on + strandat 347.158 kb on + strandat 347.159 kb on - strandat 347.298 kb on - strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.325 kb on - strand, within GFF664at 347.333 kb on + strand, within GFF664at 347.375 kb on + strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.884 kb on - strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.988 kb on + strand, within GFF665at 347.989 kb on - strand, within GFF665at 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.022 kb on - strandat 348.030 kb on + strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.158 kb on + strandat 348.158 kb on + strandat 348.976 kb on + strand, within GFF666at 348.976 kb on + strand, within GFF666at 348.977 kb on - strand, within GFF666at 348.977 kb on - strand, within GFF666at 349.036 kb on + strand, within GFF666at 349.036 kb on + strand, within GFF666at 349.037 kb on - strand, within GFF666at 349.037 kb on - strand, within GFF666

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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346,624 + GFF663 0.69 +0.0
346,624 + GFF663 0.69 +1.4
346,624 + GFF663 0.69 +0.7
346,711 + GFF663 0.75 +1.6
346,712 - GFF663 0.75 +0.3
346,712 - GFF663 0.75 +0.3
346,712 - GFF663 0.75 -0.2
347,002 + +0.1
347,114 - +0.4
347,158 + -0.1
347,158 + -1.6
347,159 - -0.3
347,298 - GFF664 0.29 +0.1
347,324 + GFF664 0.35 +0.5
347,324 + GFF664 0.35 +0.4
347,324 + GFF664 0.35 +1.0
347,325 - GFF664 0.35 -1.2
347,333 + GFF664 0.37 +0.6
347,375 + GFF664 0.47 -0.3
347,376 - GFF664 0.47 +0.9
347,376 - GFF664 0.47 +0.8
347,376 - GFF664 0.47 +0.5
347,376 - GFF664 0.47 -0.1
347,376 - GFF664 0.47 +1.0
347,540 + GFF664 0.84 -0.0
347,540 + GFF664 0.84 +0.4
347,540 + GFF664 0.84 -0.4
347,540 + GFF664 0.84 +2.5
347,540 + GFF664 0.84 +0.4
347,540 + GFF664 0.84 +0.8
347,541 - GFF664 0.84 +0.0
347,541 - GFF664 0.84 -0.0
347,883 + GFF665 0.61 +0.4
347,883 + GFF665 0.61 +1.8
347,883 + GFF665 0.61 +0.5
347,883 + GFF665 0.61 +0.9
347,883 + GFF665 0.61 +0.6
347,883 + GFF665 0.61 +0.1
347,883 + GFF665 0.61 -0.6
347,884 - GFF665 0.61 -0.4
347,946 + GFF665 0.75 -0.8
347,946 + GFF665 0.75 +0.1
347,947 - GFF665 0.75 -0.7
347,947 - GFF665 0.75 +0.0
347,988 + GFF665 0.85 -0.0
347,989 - GFF665 0.85 -0.7
348,021 + -0.2
348,021 + -0.0
348,021 + -0.2
348,021 + +1.8
348,022 - +0.9
348,030 + -0.2
348,031 - -1.2
348,031 - +0.9
348,031 - -0.8
348,031 - -0.2
348,158 + +0.0
348,158 + -0.4
348,976 + GFF666 0.65 +0.3
348,976 + GFF666 0.65 +0.0
348,977 - GFF666 0.65 +0.5
348,977 - GFF666 0.65 -0.7
349,036 + GFF666 0.70 -0.3
349,036 + GFF666 0.70 -0.9
349,037 - GFF666 0.70 +1.0
349,037 - GFF666 0.70 +0.4

Or see this region's nucleotide sequence