Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF64

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF63 and GFF64 are separated by 191 nucleotidesGFF64 and GFF65 are separated by 7 nucleotides GFF63 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 64,046 to 64,735 GFF63 GFF64 - Predicted secretion system X protein GspG-like 3, at 64,927 to 65,358 GFF64 GFF65 - Predicted secretion system X protein GspF-like, at 65,366 to 66,556 GFF65 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1at 64.015 kb on - strandat 64.015 kb on - strandat 64.031 kb on + strandat 64.350 kb on - strand, within GFF63at 65.251 kb on + strand, within GFF64at 65.372 kb on + strandat 65.742 kb on - strand, within GFF65at 65.943 kb on - strand, within GFF65at 65.943 kb on - strand, within GFF65

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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64,015 - +0.1
64,015 - -0.5
64,031 + -1.8
64,350 - GFF63 0.44 -0.9
65,251 + GFF64 0.75 +1.6
65,372 + -1.9
65,742 - GFF65 0.32 +0.5
65,943 - GFF65 0.48 -0.8
65,943 - GFF65 0.48 -1.8

Or see this region's nucleotide sequence