Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF593 and GFF594 are separated by 378 nucleotides GFF594 and GFF595 overlap by 20 nucleotides GFF595 and GFF596 are separated by 11 nucleotides
GFF593 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 264,988 to 267,939
GFF593
GFF594 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD, at 268,318 to 268,941
GFF594
GFF595 - two component, sigma54 specific, transcriptional regulator, Fis family, at 268,922 to 270,427
GFF595
GFF596 - Two-component sensor PilS, at 270,439 to 272,241
GFF596
Position (kb) 268
269
270
271 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 268.064 kb on + strand at 268.088 kb on + strand at 268.088 kb on + strand at 268.089 kb on - strand at 268.089 kb on - strand at 268.118 kb on + strand at 268.517 kb on + strand, within GFF594 at 268.778 kb on + strand, within GFF594 at 269.089 kb on - strand, within GFF595 at 269.089 kb on - strand, within GFF595 at 269.451 kb on + strand, within GFF595 at 269.667 kb on + strand, within GFF595 at 269.668 kb on - strand, within GFF595 at 269.668 kb on - strand, within GFF595 at 270.014 kb on + strand, within GFF595 at 270.015 kb on - strand, within GFF595 at 270.114 kb on + strand, within GFF595 at 270.115 kb on - strand, within GFF595 at 270.115 kb on - strand, within GFF595 at 270.165 kb on + strand, within GFF595 at 270.165 kb on + strand, within GFF595 at 270.166 kb on - strand, within GFF595 at 270.360 kb on + strand at 270.361 kb on - strand at 270.584 kb on + strand at 270.585 kb on - strand at 270.671 kb on + strand, within GFF596 at 270.671 kb on + strand, within GFF596 at 270.671 kb on + strand, within GFF596 at 270.671 kb on + strand, within GFF596 at 270.672 kb on - strand, within GFF596 at 270.672 kb on - strand, within GFF596 at 270.672 kb on - strand, within GFF596
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 268,064 + +0.8 268,088 + +0.5 268,088 + -0.1 268,089 - +0.9 268,089 - +1.6 268,118 + +0.6 268,517 + GFF594 0.32 +3.3 268,778 + GFF594 0.74 +4.0 269,089 - GFF595 0.11 +1.0 269,089 - GFF595 0.11 +1.3 269,451 + GFF595 0.35 +2.3 269,667 + GFF595 0.49 +2.0 269,668 - GFF595 0.50 +3.3 269,668 - GFF595 0.50 +2.0 270,014 + GFF595 0.73 +0.0 270,015 - GFF595 0.73 +4.6 270,114 + GFF595 0.79 +1.8 270,115 - GFF595 0.79 +1.8 270,115 - GFF595 0.79 +2.9 270,165 + GFF595 0.83 +2.9 270,165 + GFF595 0.83 +3.0 270,166 - GFF595 0.83 +1.9 270,360 + +1.6 270,361 - +1.3 270,584 + +1.0 270,585 - +1.6 270,671 + GFF596 0.13 +0.2 270,671 + GFF596 0.13 +1.1 270,671 + GFF596 0.13 +1.0 270,671 + GFF596 0.13 +0.6 270,672 - GFF596 0.13 +0.5 270,672 - GFF596 0.13 +0.7 270,672 - GFF596 0.13 +1.6
Or see this region's nucleotide sequence