Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5747 and GFF5748 overlap by 4 nucleotides GFF5748 and GFF5749 are separated by 85 nucleotides GFF5749 and GFF5750 overlap by 4 nucleotides GFF5750 and GFF5751 are separated by 16 nucleotides
GFF5747 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 2,772,404 to 2,773,063
GFF5747
GFF5748 - Zinc uptake regulation protein ZUR, at 2,773,060 to 2,773,539
GFF5748
GFF5749 - Zinc ABC transporter, ATP-binding protein ZnuC, at 2,773,625 to 2,774,410
GFF5749
GFF5750 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 2,774,407 to 2,775,276
GFF5750
GFF5751 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 2,775,293 to 2,776,237
GFF5751
Position (kb)
2773
2774
2775 Strain fitness (log2 ratio)
-2
-1
0
1 at 2773.039 kb on - strand at 2773.039 kb on - strand at 2773.039 kb on - strand at 2773.698 kb on - strand at 2774.587 kb on + strand, within GFF5750 at 2774.587 kb on + strand, within GFF5750 at 2774.720 kb on - strand, within GFF5750 at 2774.720 kb on - strand, within GFF5750
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 2,773,039 - -0.7 2,773,039 - +1.3 2,773,039 - +0.2 2,773,698 - -0.2 2,774,587 + GFF5750 0.21 -0.4 2,774,587 + GFF5750 0.21 -2.7 2,774,720 - GFF5750 0.36 +1.0 2,774,720 - GFF5750 0.36 -0.6
Or see this region's nucleotide sequence