Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5546

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
2,552,367	-		GFF5545	0.71	-1.1
2,552,383	+		GFF5545	0.73	+0.2
2,552,383	+		GFF5545	0.73	+1.7
2,552,383	+		GFF5545	0.73	+0.2
2,552,383	+		GFF5545	0.73	-0.1
2,552,383	+		GFF5545	0.73	+0.4
2,552,384	-		GFF5545	0.73	+0.4
2,552,440	+		GFF5545	0.82	-0.4
2,552,440	+		GFF5545	0.82	-0.3
2,552,440	+		GFF5545	0.82	-0.9
2,552,441	-		GFF5545	0.82	+0.9
2,552,441	-		GFF5545	0.82	-0.3
2,552,441	-		GFF5545	0.82	-0.3
2,552,441	-		GFF5545	0.82	+0.5
2,552,664	+				+0.1
2,552,673	+				+0.8
2,552,674	-				+0.5
2,552,674	-				+0.8
2,552,738	-				-0.1
2,552,820	-				+0.2
2,552,881	+				+0.0
2,552,881	+				+0.3
2,552,882	-				-0.5
2,553,027	+				+0.7
2,553,027	+				+0.1
2,553,028	-				+0.7
2,553,172	+				-1.1
2,553,173	-				+0.7
2,553,307	+				-0.1
2,553,307	+				-0.1
2,553,307	+				+0.2
2,553,308	-				-0.3
2,553,308	-				+0.2
2,553,311	+				-0.1
2,553,311	+				+0.8
2,553,350	-				-1.0
2,553,673	-		GFF5546	0.60	-0.3
2,553,784	+		GFF5546	0.81	-0.6
2,553,785	-		GFF5546	0.81	-0.3
2,553,785	-		GFF5546	0.81	-0.4
2,553,890	+				-1.9
2,553,891	-				-0.2
2,553,932	+				-0.2
2,553,932	+				-1.0
2,553,933	-				-0.6
2,554,188	+		GFF5547	0.21	+1.2
2,554,227	-		GFF5547	0.24	+0.1
2,554,241	+		GFF5547	0.25	+1.0
2,554,241	+		GFF5547	0.25	+0.0
2,554,242	-		GFF5547	0.25	+0.2
2,554,289	+		GFF5547	0.28	+0.6
2,554,328	+		GFF5547	0.31	-0.3
2,554,349	+		GFF5547	0.32	-0.0
2,554,350	-		GFF5547	0.33	-0.2
2,554,403	+		GFF5547	0.36	-0.5
2,554,403	+		GFF5547	0.36	-0.0
2,554,404	-		GFF5547	0.36	-0.7
2,554,404	-		GFF5547	0.36	-0.1
2,554,404	-		GFF5547	0.36	-0.1
2,554,404	-		GFF5547	0.36	-0.4
2,554,404	-		GFF5547	0.36	+0.2
2,554,501	+		GFF5547	0.44	-0.6
2,554,502	-		GFF5547	0.44	+0.7
2,554,550	+		GFF5547	0.47	-0.5
2,554,551	-		GFF5547	0.47	+0.4
2,554,551	-		GFF5547	0.47	+0.9
2,554,551	-		GFF5547	0.47	-1.1
2,554,551	-		GFF5547	0.47	-0.3
2,554,551	-		GFF5547	0.47	-0.7
2,554,551	-		GFF5547	0.47	+0.2
2,554,588	+		GFF5547	0.50	-0.4
2,554,730	+		GFF5547	0.60	+0.2
2,554,730	+		GFF5547	0.60	-1.7
2,554,730	+		GFF5547	0.60	+0.0
2,554,730	-		GFF5547	0.60	+0.1
2,554,731	-		GFF5547	0.60	+0.6
2,554,731	-		GFF5547	0.60	-1.9
2,554,731	-		GFF5547	0.60	-1.6
2,554,731	-		GFF5547	0.60	-0.7
2,554,757	+		GFF5547	0.62	-0.6
2,554,757	+		GFF5547	0.62	+1.7
2,554,757	+		GFF5547	0.62	+0.8
2,554,757	+		GFF5547	0.62	-0.8
2,554,758	-		GFF5547	0.62	+0.2
2,554,839	-		GFF5547	0.68	-0.9
2,554,839	-		GFF5547	0.68	-0.3