Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5446

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
2,447,938	+				+2.1
2,448,205	+		GFF5445	0.35	+0.5
2,448,206	-		GFF5445	0.35	+0.3
2,448,367	+		GFF5445	0.52	+1.1
2,448,367	+		GFF5445	0.52	+0.8
2,448,367	+		GFF5445	0.52	+0.5
2,448,367	+		GFF5445	0.52	+0.3
2,448,367	+		GFF5445	0.52	+0.4
2,448,367	+		GFF5445	0.52	-0.6
2,448,368	-		GFF5445	0.52	+0.1
2,448,368	-		GFF5445	0.52	+1.2
2,448,368	-		GFF5445	0.52	+0.5
2,448,368	-		GFF5445	0.52	+0.8
2,448,368	-		GFF5445	0.52	-0.2
2,448,439	+		GFF5445	0.59	+1.1
2,448,439	+		GFF5445	0.59	+1.0
2,448,439	+		GFF5445	0.59	+0.4
2,448,440	-		GFF5445	0.59	+1.0
2,448,936	+				+0.0
2,448,936	+				+0.1
2,448,937	-				+0.2
2,449,438	+				+0.2
2,449,446	+				+0.7
2,449,447	-				+0.1
2,449,814	+		GFF5447	0.42	+0.1
2,449,814	+		GFF5447	0.42	-0.2
2,449,815	-		GFF5447	0.42	-0.5
2,449,899	-		GFF5447	0.52	+0.7
2,450,135	+		GFF5447	0.81	-0.1